A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.8
nTPM
Monaco:
17.8
nTPM
Schmiedel:
13.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.8
HPA sample
nTPM
Classical monocyte nTPM: 5.8
Samples: 6
Max nTPM: 6.3
Min nTPM: 5.1
P10809_1003
6.0
P10809_1020
5.6
P10809_1039
6.3
P10809_1058
5.3
P10809_1080
6.2
P10809_1107
5.1
Intermediate monocyte nTPM: 2.4
Samples: 6
Max nTPM: 5.1
Min nTPM: 0.7
P10809_1004
1.8
P10809_1023
0.7
P10809_1042
3.0
P10809_1061
5.1
P10809_1081
2.2
P10809_1108
1.7
Non-classical monocyte nTPM: 1.9
Samples: 5
Max nTPM: 3.0
Min nTPM: 0.0
P10809_1005
3.0
P10809_1053
2.4
P10809_1072
0.0
P10809_1082
2.5
P10809_1109
1.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.8
Monaco sample
nTPM
Classical monocyte nTPM: 17.8
Samples: 4
Max nTPM: 20.9
Min nTPM: 14.7
RHH5313_R3680
20.1
RHH5221_R3593
15.7
RHH5250_R3622
20.9
RHH5279_R3651
14.7
Intermediate monocyte nTPM: 7.4
Samples: 4
Max nTPM: 11.6
Min nTPM: 1.8
RHH5314_R3681
7.5
RHH5222_R3594
1.8
RHH5251_R3623
11.6
RHH5280_R3652
8.9
Non-classical monocyte nTPM: 10.1
Samples: 4
Max nTPM: 17.8
Min nTPM: 5.4
RHH5315_R3682
6.7
RHH5223_R3595
10.5
RHH5252_R3624
17.8
RHH5281_R3653
5.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.9
Schmiedel sample id
TPM
Classical monocyte TPM: 13.9
Samples: 91
Max TPM: 22.4
Min TPM: 6.4
MONOCYTES_1
22.4
MONOCYTES_2
20.7
MONOCYTES_3
19.8
MONOCYTES_4
19.8
MONOCYTES_5
19.7
MONOCYTES_6
19.6
MONOCYTES_7
18.8
MONOCYTES_8
18.8
MONOCYTES_9
18.6
MONOCYTES_10
18.5
MONOCYTES_11
18.0
MONOCYTES_12
18.0
MONOCYTES_13
17.9
MONOCYTES_14
17.8
MONOCYTES_15
17.7
MONOCYTES_16
17.7
MONOCYTES_17
17.6
MONOCYTES_18
17.6
MONOCYTES_19
17.5
MONOCYTES_20
17.5
MONOCYTES_21
17.5
MONOCYTES_22
17.3
MONOCYTES_23
17.2
MONOCYTES_24
17.1
MONOCYTES_25
17.0
MONOCYTES_26
16.8
MONOCYTES_27
16.8
MONOCYTES_28
16.5
MONOCYTES_29
16.2
MONOCYTES_30
16.0
MONOCYTES_31
16.0
MONOCYTES_32
16.0
MONOCYTES_33
15.9
MONOCYTES_34
15.6
MONOCYTES_35
15.6
MONOCYTES_36
15.0
MONOCYTES_37
14.8
MONOCYTES_38
14.6
MONOCYTES_39
14.5
MONOCYTES_40
14.4
MONOCYTES_41
14.4
MONOCYTES_42
14.4
MONOCYTES_43
14.3
MONOCYTES_44
14.1
MONOCYTES_45
14.1
MONOCYTES_46
14.0
MONOCYTES_47
13.6
MONOCYTES_48
13.6
MONOCYTES_49
13.6
MONOCYTES_50
13.3
MONOCYTES_51
13.2
MONOCYTES_52
12.7
MONOCYTES_53
12.7
MONOCYTES_54
12.6
MONOCYTES_55
12.6
MONOCYTES_56
12.4
MONOCYTES_57
12.1
MONOCYTES_58
12.0
MONOCYTES_59
12.0
MONOCYTES_60
12.0
MONOCYTES_61
11.8
MONOCYTES_62
11.3
MONOCYTES_63
11.2
MONOCYTES_64
11.2
MONOCYTES_65
11.2
MONOCYTES_66
10.9
MONOCYTES_67
10.9
MONOCYTES_68
10.9
MONOCYTES_69
10.7
MONOCYTES_70
10.5
MONOCYTES_71
10.5
MONOCYTES_72
10.5
MONOCYTES_73
10.5
MONOCYTES_74
10.4
MONOCYTES_75
10.4
MONOCYTES_76
10.2
MONOCYTES_77
9.9
MONOCYTES_78
9.8
MONOCYTES_79
9.8
MONOCYTES_80
9.8
MONOCYTES_81
9.4
MONOCYTES_82
9.3
MONOCYTES_83
9.1
MONOCYTES_84
9.0
MONOCYTES_85
8.8
MONOCYTES_86
8.7
MONOCYTES_87
8.0
MONOCYTES_88
7.6
MONOCYTES_89
7.2
MONOCYTES_90
6.6
MONOCYTES_91
6.4
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Non-classical monocyte TPM: 8.5
Samples: 90
Max TPM: 16.8
Min TPM: 3.7
M2_1
16.8
M2_2
15.5
M2_3
15.2
M2_4
13.6
M2_5
13.3
M2_6
13.0
M2_7
12.5
M2_8
12.3
M2_9
11.7
M2_10
11.6
M2_11
11.5
M2_12
11.4
M2_13
11.4
M2_14
11.4
M2_15
11.2
M2_16
11.1
M2_17
11.1
M2_18
11.0
M2_19
10.8
M2_20
10.7
M2_21
10.6
M2_22
10.6
M2_23
10.5
M2_24
10.4
M2_25
10.4
M2_26
10.4
M2_27
10.2
M2_28
10.1
M2_29
10.0
M2_30
9.9
M2_31
9.9
M2_32
9.9
M2_33
9.8
M2_34
9.6
M2_35
9.6
M2_36
9.6
M2_37
9.3
M2_38
9.3
M2_39
9.1
M2_40
9.0
M2_41
8.8
M2_42
8.8
M2_43
8.7
M2_44
8.7
M2_45
8.7
M2_46
8.6
M2_47
8.4
M2_48
8.1
M2_49
8.1
M2_50
8.0
M2_51
8.0
M2_52
7.7
M2_53
7.6
M2_54
7.6
M2_55
7.5
M2_56
7.3
M2_57
7.2
M2_58
7.2
M2_59
7.1
M2_60
6.9
M2_61
6.9
M2_62
6.9
M2_63
6.7
M2_64
6.6
M2_65
6.5
M2_66
6.4
M2_67
6.4
M2_68
6.3
M2_69
6.3
M2_70
6.1
M2_71
6.0
M2_72
5.8
M2_73
5.7
M2_74
5.6
M2_75
5.6
M2_76
5.4
M2_77
5.4
M2_78
5.2
M2_79
5.1
M2_80
5.0
M2_81
4.9
M2_82
4.8
M2_83
4.7
M2_84
4.5
M2_85
4.5
M2_86
4.2
M2_87
4.2
M2_88
4.1
M2_89
3.7
M2_90
3.7
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