A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.4
nTPM
Monaco:
9.5
nTPM
Schmiedel:
34.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.4
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.8
P10809_1003
1.0
P10809_1020
0.8
P10809_1039
1.2
P10809_1058
1.2
P10809_1080
1.7
P10809_1107
2.6
Intermediate monocyte nTPM: 0.9
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.4
P10809_1004
0.6
P10809_1023
0.5
P10809_1042
0.4
P10809_1061
2.1
P10809_1081
0.7
P10809_1108
1.3
Non-classical monocyte nTPM: 0.4
Samples: 5
Max nTPM: 0.8
Min nTPM: 0.0
P10809_1005
0.6
P10809_1053
0.4
P10809_1072
0.0
P10809_1082
0.3
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.5
Monaco sample
nTPM
Classical monocyte nTPM: 9.5
Samples: 4
Max nTPM: 16.0
Min nTPM: 5.8
RHH5313_R3680
9.7
RHH5221_R3593
5.8
RHH5250_R3622
16.0
RHH5279_R3651
6.4
Intermediate monocyte nTPM: 6.4
Samples: 4
Max nTPM: 10.3
Min nTPM: 3.3
RHH5314_R3681
3.3
RHH5222_R3594
7.3
RHH5251_R3623
10.3
RHH5280_R3652
4.5
Non-classical monocyte nTPM: 4.7
Samples: 4
Max nTPM: 6.5
Min nTPM: 2.5
RHH5315_R3682
3.9
RHH5223_R3595
5.7
RHH5252_R3624
6.5
RHH5281_R3653
2.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.2
Schmiedel sample id
TPM
Classical monocyte TPM: 34.2
Samples: 91
Max TPM: 57.7
Min TPM: 16.5
MONOCYTES_1
57.7
MONOCYTES_2
54.1
MONOCYTES_3
54.1
MONOCYTES_4
51.6
MONOCYTES_5
51.4
MONOCYTES_6
48.5
MONOCYTES_7
48.4
MONOCYTES_8
48.2
MONOCYTES_9
47.8
MONOCYTES_10
47.3
MONOCYTES_11
46.7
MONOCYTES_12
46.6
MONOCYTES_13
46.6
MONOCYTES_14
46.3
MONOCYTES_15
45.7
MONOCYTES_16
44.9
MONOCYTES_17
44.4
MONOCYTES_18
43.9
MONOCYTES_19
43.7
MONOCYTES_20
42.5
MONOCYTES_21
42.4
MONOCYTES_22
42.4
MONOCYTES_23
42.3
MONOCYTES_24
41.9
MONOCYTES_25
40.9
MONOCYTES_26
40.3
MONOCYTES_27
40.2
MONOCYTES_28
38.8
MONOCYTES_29
38.7
MONOCYTES_30
38.2
MONOCYTES_31
37.5
MONOCYTES_32
37.4
MONOCYTES_33
37.1
MONOCYTES_34
37.1
MONOCYTES_35
36.9
MONOCYTES_36
36.4
MONOCYTES_37
36.1
MONOCYTES_38
35.1
MONOCYTES_39
34.5
MONOCYTES_40
34.3
MONOCYTES_41
34.1
MONOCYTES_42
33.8
MONOCYTES_43
33.7
MONOCYTES_44
33.5
MONOCYTES_45
33.4
MONOCYTES_46
32.9
MONOCYTES_47
32.9
MONOCYTES_48
32.5
MONOCYTES_49
32.2
MONOCYTES_50
32.1
MONOCYTES_51
31.8
MONOCYTES_52
31.5
MONOCYTES_53
30.7
MONOCYTES_54
30.3
MONOCYTES_55
30.3
MONOCYTES_56
30.3
MONOCYTES_57
29.9
MONOCYTES_58
29.5
MONOCYTES_59
29.5
MONOCYTES_60
29.4
MONOCYTES_61
29.4
MONOCYTES_62
29.4
MONOCYTES_63
29.3
MONOCYTES_64
29.0
MONOCYTES_65
28.8
MONOCYTES_66
27.9
MONOCYTES_67
27.5
MONOCYTES_68
27.5
MONOCYTES_69
27.3
MONOCYTES_70
27.3
MONOCYTES_71
26.8
MONOCYTES_72
26.2
MONOCYTES_73
25.4
MONOCYTES_74
25.1
MONOCYTES_75
24.6
MONOCYTES_76
24.3
MONOCYTES_77
23.2
MONOCYTES_78
23.1
MONOCYTES_79
23.1
MONOCYTES_80
22.8
MONOCYTES_81
22.8
MONOCYTES_82
22.6
MONOCYTES_83
22.5
MONOCYTES_84
22.3
MONOCYTES_85
21.4
MONOCYTES_86
20.3
MONOCYTES_87
19.7
MONOCYTES_88
19.1
MONOCYTES_89
18.5
MONOCYTES_90
17.4
MONOCYTES_91
16.5
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Non-classical monocyte TPM: 8.5
Samples: 90
Max TPM: 15.4
Min TPM: 2.9
M2_1
15.4
M2_2
15.1
M2_3
15.1
M2_4
14.7
M2_5
14.5
M2_6
13.9
M2_7
13.4
M2_8
12.8
M2_9
12.4
M2_10
12.4
M2_11
12.3
M2_12
12.2
M2_13
11.9
M2_14
11.9
M2_15
11.7
M2_16
11.6
M2_17
11.4
M2_18
11.2
M2_19
11.1
M2_20
11.0
M2_21
11.0
M2_22
10.8
M2_23
10.7
M2_24
10.6
M2_25
10.5
M2_26
10.3
M2_27
10.2
M2_28
10.1
M2_29
9.9
M2_30
9.8
M2_31
9.8
M2_32
9.7
M2_33
9.5
M2_34
9.5
M2_35
9.3
M2_36
9.3
M2_37
9.2
M2_38
9.2
M2_39
9.2
M2_40
8.9
M2_41
8.9
M2_42
8.8
M2_43
8.8
M2_44
8.7
M2_45
8.4
M2_46
8.4
M2_47
8.3
M2_48
8.2
M2_49
8.2
M2_50
7.9
M2_51
7.8
M2_52
7.5
M2_53
7.4
M2_54
7.4
M2_55
7.4
M2_56
7.3
M2_57
7.2
M2_58
7.2
M2_59
7.0
M2_60
6.9
M2_61
6.8
M2_62
6.6
M2_63
6.6
M2_64
6.4
M2_65
6.4
M2_66
6.3
M2_67
6.2
M2_68
6.1
M2_69
5.9
M2_70
5.7
M2_71
5.5
M2_72
5.4
M2_73
5.4
M2_74
5.2
M2_75
5.2
M2_76
5.2
M2_77
5.0
M2_78
5.0
M2_79
4.8
M2_80
4.7
M2_81
4.6
M2_82
4.4
M2_83
4.4
M2_84
4.3
M2_85
4.2
M2_86
4.0
M2_87
3.7
M2_88
3.5
M2_89
3.4
M2_90
2.9
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