A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
23.4
nTPM
Schmiedel:
47.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Classical monocyte nTPM: 1.3
Samples: 6
Max nTPM: 1.7
Min nTPM: 1.1
P10809_1003
1.1
P10809_1020
1.1
P10809_1039
1.1
P10809_1058
1.2
P10809_1080
1.7
P10809_1107
1.3
Intermediate monocyte nTPM: 1.6
Samples: 6
Max nTPM: 3.1
Min nTPM: 1.0
P10809_1004
3.1
P10809_1023
1.2
P10809_1042
1.7
P10809_1061
1.2
P10809_1081
1.2
P10809_1108
1.0
Non-classical monocyte nTPM: 1.6
Samples: 5
Max nTPM: 3.3
Min nTPM: 0.9
P10809_1005
1.6
P10809_1053
1.1
P10809_1072
3.3
P10809_1082
0.9
P10809_1109
1.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.4
Monaco sample
nTPM
Classical monocyte nTPM: 22.1
Samples: 4
Max nTPM: 23.6
Min nTPM: 20.3
RHH5313_R3680
22.6
RHH5221_R3593
20.3
RHH5250_R3622
21.8
RHH5279_R3651
23.6
Intermediate monocyte nTPM: 23.4
Samples: 4
Max nTPM: 34.5
Min nTPM: 17.1
RHH5314_R3681
17.1
RHH5222_R3594
17.2
RHH5251_R3623
34.5
RHH5280_R3652
24.7
Non-classical monocyte nTPM: 22.1
Samples: 4
Max nTPM: 31.8
Min nTPM: 16.2
RHH5315_R3682
19.7
RHH5223_R3595
20.8
RHH5252_R3624
31.8
RHH5281_R3653
16.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.7
Schmiedel sample id
TPM
Classical monocyte TPM: 35.2
Samples: 91
Max TPM: 43.2
Min TPM: 28.4
MONOCYTES_1
43.2
MONOCYTES_2
43.1
MONOCYTES_3
42.7
MONOCYTES_4
42.5
MONOCYTES_5
40.9
MONOCYTES_6
40.7
MONOCYTES_7
39.7
MONOCYTES_8
39.6
MONOCYTES_9
39.6
MONOCYTES_10
39.5
MONOCYTES_11
39.4
MONOCYTES_12
39.3
MONOCYTES_13
38.6
MONOCYTES_14
38.4
MONOCYTES_15
38.4
MONOCYTES_16
38.2
MONOCYTES_17
37.9
MONOCYTES_18
37.7
MONOCYTES_19
37.5
MONOCYTES_20
37.5
MONOCYTES_21
37.5
MONOCYTES_22
37.4
MONOCYTES_23
37.4
MONOCYTES_24
37.3
MONOCYTES_25
37.3
MONOCYTES_26
37.3
MONOCYTES_27
37.3
MONOCYTES_28
37.2
MONOCYTES_29
37.0
MONOCYTES_30
37.0
MONOCYTES_31
36.8
MONOCYTES_32
36.8
MONOCYTES_33
36.8
MONOCYTES_34
36.6
MONOCYTES_35
36.4
MONOCYTES_36
36.4
MONOCYTES_37
36.3
MONOCYTES_38
36.0
MONOCYTES_39
35.9
MONOCYTES_40
35.6
MONOCYTES_41
35.6
MONOCYTES_42
35.6
MONOCYTES_43
35.6
MONOCYTES_44
35.5
MONOCYTES_45
35.5
MONOCYTES_46
35.3
MONOCYTES_47
35.3
MONOCYTES_48
35.1
MONOCYTES_49
35.1
MONOCYTES_50
35.1
MONOCYTES_51
35.1
MONOCYTES_52
35.0
MONOCYTES_53
34.9
MONOCYTES_54
34.8
MONOCYTES_55
34.7
MONOCYTES_56
34.5
MONOCYTES_57
34.5
MONOCYTES_58
34.4
MONOCYTES_59
34.3
MONOCYTES_60
34.1
MONOCYTES_61
33.8
MONOCYTES_62
33.8
MONOCYTES_63
33.7
MONOCYTES_64
33.6
MONOCYTES_65
33.6
MONOCYTES_66
33.5
MONOCYTES_67
33.3
MONOCYTES_68
32.7
MONOCYTES_69
32.5
MONOCYTES_70
32.3
MONOCYTES_71
32.2
MONOCYTES_72
32.0
MONOCYTES_73
32.0
MONOCYTES_74
31.9
MONOCYTES_75
31.8
MONOCYTES_76
31.7
MONOCYTES_77
31.4
MONOCYTES_78
31.2
MONOCYTES_79
31.1
MONOCYTES_80
31.0
MONOCYTES_81
30.8
MONOCYTES_82
30.5
MONOCYTES_83
30.2
MONOCYTES_84
29.9
MONOCYTES_85
29.9
MONOCYTES_86
29.2
MONOCYTES_87
29.1
MONOCYTES_88
28.7
MONOCYTES_89
28.6
MONOCYTES_90
28.5
MONOCYTES_91
28.4
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Non-classical monocyte TPM: 47.7
Samples: 90
Max TPM: 64.1
Min TPM: 34.1
M2_1
64.1
M2_2
62.1
M2_3
61.2
M2_4
60.1
M2_5
60.0
M2_6
58.6
M2_7
58.0
M2_8
57.3
M2_9
56.3
M2_10
55.4
M2_11
54.4
M2_12
54.3
M2_13
54.2
M2_14
54.2
M2_15
53.6
M2_16
53.0
M2_17
53.0
M2_18
52.8
M2_19
52.5
M2_20
51.7
M2_21
51.7
M2_22
51.5
M2_23
51.4
M2_24
51.3
M2_25
51.1
M2_26
50.3
M2_27
50.2
M2_28
50.1
M2_29
50.0
M2_30
49.9
M2_31
49.9
M2_32
49.6
M2_33
49.1
M2_34
49.1
M2_35
48.7
M2_36
48.6
M2_37
48.4
M2_38
48.1
M2_39
47.9
M2_40
47.7
M2_41
47.6
M2_42
47.6
M2_43
47.1
M2_44
47.0
M2_45
46.7
M2_46
46.6
M2_47
46.5
M2_48
46.4
M2_49
46.4
M2_50
46.3
M2_51
46.1
M2_52
45.9
M2_53
45.8
M2_54
45.6
M2_55
45.4
M2_56
45.0
M2_57
45.0
M2_58
44.9
M2_59
44.8
M2_60
44.8
M2_61
44.7
M2_62
44.7
M2_63
44.5
M2_64
44.3
M2_65
44.0
M2_66
43.9
M2_67
43.8
M2_68
43.3
M2_69
43.0
M2_70
42.7
M2_71
42.5
M2_72
42.3
M2_73
42.2
M2_74
42.2
M2_75
41.9
M2_76
41.6
M2_77
41.6
M2_78
41.5
M2_79
41.5
M2_80
41.3
M2_81
41.1
M2_82
41.0
M2_83
40.7
M2_84
40.6
M2_85
40.1
M2_86
38.8
M2_87
38.0
M2_88
37.8
M2_89
36.4
M2_90
34.1
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