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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:57.6 nTPM
HPA Brain:183.7 nTPM
GTEx:57.6 nTPM
FANTOM5:151.3 Scaled Tags Per Million
Pig:109.9 nTPM
Mouse:183.1 nTPM
Allen mouse:14.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.7
Sample id Sample description nTPM
Amygdala
nTPM: 155.7
2814 Male, age 76, right hemisphere 190.1
2514 Male, age 75, right hemisphere 159.7
2517 Female, age 94, left hemisphere 159.7
2695 Female, age 67, right hemisphere 140.7
1987 Female, age 91, left hemisphere 128.5
Basal amygdala
nTPM: 157.6
2827 Female, age 67, right hemisphere 191.7
2685 Female, age 94, left hemisphere 176.3
2110 Male, age 80, left hemisphere 160.9
1955 Male, age 76, both hemispheres 151.9
2243 Female, age 91, right hemisphere 132.5
2609 Male, age 75, right hemisphere 132.5
Central amygdala
nTPM: 158.7
2826 Female, age 94, left hemisphere 207.4
1905 Male, age 76, both hemispheres 173.8
2239 Male, age 80, left hemisphere 156.7
2701 Female, age 91, right hemisphere 133.2
2515 Male, age 75, right hemisphere 122.7
Corticomedial amygdala
nTPM: 138.0
2535 Female, age 67, right hemisphere 163.2
2429 Female, age 94, left hemisphere 146.9
2829 Male, age 80, left hemisphere 141.1
2428 Male, age 75, right hemisphere 139.0
2242 Female, age 91, right hemisphere 124.4
2240 Male, age 76, both hemispheres 113.5
Lateral amygdala
nTPM: 183.7
2534 Female, age 94, left hemisphere 225.5
2830 Female, age 67, right hemisphere 209.3
2256 Male, age 80, left hemisphere 183.2
1883 Male, age 76, both hemispheres 166.8
2516 Male, age 75, right hemisphere 163.6
2255 Female, age 91, right hemisphere 154.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 57.6
Samples: 181

Max nTPM: 155.6
Min nTPM: 9.3
Std nTPM: 24.7
Median nTPM: 53.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 155.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 138.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 123.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 119.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 119.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 118.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 109.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 108.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 106.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 104.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 104.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 103.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 102.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 99.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 99.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 99.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 88.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 88.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 88.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 87.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 86.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 85.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 85.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 83.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 83.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 82.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 81.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 80.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 77.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 77.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 77.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 76.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 76.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 76.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 74.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 74.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 74.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 73.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 72.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 71.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 70.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 70.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 70.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 69.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 69.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 69.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 67.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 66.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 66.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 64.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 64.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 64.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 64.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 63.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 63.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 62.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 62.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 62.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 62.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 61.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 60.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 60.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 60.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 60.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 60.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 60.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 59.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 59.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 59.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 59.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 59.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 59.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 58.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 58.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 58.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 57.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 56.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 56.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 56.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 56.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 55.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 55.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 55.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 54.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 54.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 54.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 53.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 53.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 53.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 53.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 52.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 52.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 52.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 52.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 51.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 51.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 51.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 51.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 51.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 51.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 51.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 50.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 50.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 50.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 50.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 49.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 49.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 48.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 48.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 47.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 47.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 47.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 47.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 47.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 44.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 44.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 44.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 44.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 44.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 43.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 43.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 43.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 43.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 43.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 42.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 42.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 42.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 42.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 41.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 41.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 41.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 41.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 41.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 40.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 40.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 40.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 39.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 39.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 39.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 39.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 38.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 36.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 36.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 36.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 36.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 35.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 35.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 35.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 35.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 35.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 34.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 34.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 34.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 34.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 33.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 33.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 33.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 32.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 32.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 31.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 31.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 30.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 29.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 28.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 27.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 27.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 27.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 26.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 26.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 26.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 25.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 24.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 24.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 22.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 22.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 21.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 21.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 9.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.3
FF:10151-102I7 76 years, female 151.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.9
Pig sample Sample description nTPM
Amygdala
nTPM: 109.9
Samples: 4

Max nTPM: 141.3
Min nTPM: 93.7
Sample A Female 141.3
Sample B Female 100.7
Sample C Male 103.8
Sample D Male 93.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 183.2
Samples: 4

Max nTPM: 187.4
Min nTPM: 180.6
Sample A Male 180.9
Sample B Male 180.6
Sample C Female 187.4
Sample D Female 183.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.9
74658080 Antisense, RP_060220_04_D05, Mouse strain C57BL/6J (56 days, male) 15.5
69672593 Antisense, RP_050428_04_B04, Mouse strain C57BL/6J (56 days, male) 14.2

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