MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.6 nTPM
HPA Brain:186.5 nTPM
GTEx:49.6 nTPM
FANTOM5:171.8 Scaled Tags Per Million
Pig:207.6 nTPM
Mouse:100.4 nTPM
Allen mouse:6.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 186.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.9
2019 Male, age 18, unknown 181.3
2411 Female, age 72, unknown 168.6
1833 Male, age 53, unknown 161.6
2828 Female, age 72, unknown 160.4
1830 Male, age 51, unknown 142.8
1870 Female, age 42, unknown 141.0
2586 Male, age 75, left hemisphere 140.6
2666 Male, age 74, left hemisphere 139.4
2219 Male, age 76, both hemispheres 132.1
1827 Male, age 72, unknown 120.9
Dorsal raphe nucleus
nTPM: 116.2
2750 Male, age 76, both hemispheres 156.7
2016 Female, age 72, unknown 113.3
1828 Male, age 53, unknown 111.2
2298 Female, age 72, unknown 106.4
2047 Male, age 72, unknown 93.4
Inferior colliculus
nTPM: 110.7
1848 Female, age 42, unknown 116.3
2097 Female, age 72, unknown 114.7
1890 Male, age 53, unknown 106.0
2849 Male, age 72, unknown 105.7
Median raphe nucleus
nTPM: 104.9
2220 Male, age 76, midline 104.9
Periaquaductal grey, anterior
nTPM: 118.0
2502 Female, age 75, unknown 121.3
1795 Male, age 51, unknown 116.5
1947 Male, age 18, unknown 116.3
Periaquaductal grey, dorsal
nTPM: 89.8
2464 Female, age 72, unknown 125.5
1831 Male, age 72, unknown 105.2
1840 Male, age 53, unknown 72.0
2850 Male, age 76, both hemispheres 56.7
Periaquaductal grey, lateral
nTPM: 100.5
2272 Male, age 74, both hemispheres 142.9
2053 Male, age 18, unknown 104.1
2140 Male, age 76, both hemispheres 54.5
Pretectal area
nTPM: 140.3
2007 Male, age 72, unknown 190.9
1817 Female, age 42, unknown 186.0
1815 Male, age 53, unknown 184.0
1816 Male, age 51, unknown 150.9
2407 Male, age 75, both hemispheres 148.2
1944 Female, age 72, unknown 138.9
2316 Male, age 76, right hemisphere 132.7
2273 Male, age 74, both hemispheres 110.7
2825 Male, age 18, unknown 105.4
2667 Female, age 75, unknown 98.3
2224 Female, age 72, unknown 97.1
Red nucleus
nTPM: 186.5
1904 Male, age 53, unknown 223.7
2503 Female, age 72, unknown 216.2
2785 Male, age 18, unknown 216.2
2227 Male, age 72, unknown 189.8
2769 Male, age 72, unknown 189.6
1865 Male, age 51, unknown 187.7
2823 Male, age 76, right hemisphere 186.5
1954 Female, age 42, unknown 185.3
1821 Female, age 72, unknown 180.6
2725 Female, age 75, unknown 165.6
2588 Male, age 74, left hemisphere 158.2
2584 Male, age 75, left hemisphere 138.9
Substantia nigra
nTPM: 122.7
2583 Male, age 75, right hemisphere 183.2
2590 Female, age 75, unknown 182.9
1889 Female, age 72, unknown 146.5
1851 Male, age 51, unknown 121.9
2409 Female, age 72, unknown 117.5
2665 Male, age 74, both hemispheres 117.2
1916 Female, age 42, unknown 95.8
1941 Male, age 53, unknown 95.8
2699 Male, age 18, unknown 83.6
2241 Male, age 72, unknown 82.4
Superior colliculus
nTPM: 143.4
1995 Male, age 72, unknown 176.1
2261 Male, age 18, unknown 164.5
1913 Female, age 42, unknown 161.7
2587 Male, age 74, left hemisphere 149.7
1796 Male, age 53, unknown 140.1
2087 Female, age 72, unknown 139.1
2668 Female, age 75, unknown 138.2
1839 Male, age 51, unknown 130.4
1895 Male, age 76, right hemisphere 119.2
2664 Male, age 75, both hemispheres 115.2
Ventral tegmental area
nTPM: 117.4
2410 Female, age 72, unknown 152.2
2223 Female, age 72, unknown 126.1
1942 Male, age 51, unknown 114.5
1915 Female, age 42, unknown 112.1
2021 Male, age 53, unknown 103.7
2218 Male, age 76, both hemispheres 96.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.6
Samples: 183

Max nTPM: 159.2
Min nTPM: 6.0
Std nTPM: 24.2
Median nTPM: 44.1
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 159.2
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 124.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 118.0
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 117.0
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 114.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 102.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 101.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 100.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 97.3
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 96.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 94.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 171.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 171.8
FF:10158-103A5 76 years, female 171.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 207.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 168.5
Samples: 4

Max nTPM: 209.0
Min nTPM: 121.7
Sample A Female 201.8
Sample B Female 121.7
Sample C Male 141.6
Sample D Male 209.0
Midbrain
nTPM: 207.6
Samples: 4

Max nTPM: 322.0
Min nTPM: 125.3
Sample A Female 322.0
Sample B Female 162.2
Sample C Male 220.7
Sample D Male 125.3
Periaqueductal gray
nTPM: 125.0
Samples: 3

Max nTPM: 144.4
Min nTPM: 111.9
Sample B Female 144.4
Sample C Male 111.9
Sample D Male 118.6
Superior colliculi
nTPM: 178.8
Samples: 4

Max nTPM: 218.3
Min nTPM: 91.0
Sample A Female 207.4
Sample B Female 91.0
Sample C Male 218.3
Sample D Male 198.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 100.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.4
Samples: 4

Max nTPM: 113.9
Min nTPM: 94.6
Sample A Male 98.3
Sample B Male 94.9
Sample C Female 94.6
Sample D Female 113.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
69672593 Antisense, RP_050428_04_B04, Mouse strain C57BL/6J (56 days, male) 6.7
74658080 Antisense, RP_060220_04_D05, Mouse strain C57BL/6J (56 days, male) 5.5

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