FSCN1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • FSCN1
EVOLUTIONARY THALAMUS Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:262.7 nTPM
FANTOM5:176.4 Scaled Tags Per Million
Macaque:161.4 nTPM
Mouse:165.0 nTPM
Rat:181.0 nTPM
Pig:233.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

262.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 191.0
2396 Male, age 61, right hemisphere 203.4
2032 Female, age 42, unknown 193.0
2497 Male, age 66, unknown 176.6
Centromedial thalamic nucleus
nTPM: 262.7
2279 Female, age 85, left hemisphere 366.5
2401 Male, age 76, right hemisphere 158.9
Habenula
nTPM: 106.5
2203 Male, age 61, left hemisphere 117.2
1957 Male, age 80, both hemispheres 109.8
2276 Male, age 66, unknown 105.8
2252 Male, age 62, unknown 93.2
Lateral geniculate body
nTPM: 155.3
1953 Male, age 62, unknown 177.5
2575 Female, age 94, right hemisphere 171.1
2841 Male, age 80, both hemispheres 163.8
2106 Female, age 67, right hemisphere 162.1
2035 Female, age 72, unknown 160.5
2399 Male, age 61, left hemisphere 157.7
2659 Male, age 66, unknown 131.8
2857 Male, age 74, right hemisphere 118.0
Lateral thalamic nuclei
nTPM: 151.9
2765 Female, age 67, both hemispheres 200.5
2661 Female, age 72, unknown 164.7
2577 Male, age 74, both hemispheres 143.5
2573 Female, age 94, left hemisphere 133.4
1903 Male, age 76, left hemisphere 117.4
Medial dorsal thalamic nucleus
nTPM: 140.5
2660 Female, age 72, unknown 183.5
1859 Male, age 76, both hemispheres 168.4
1971 Male, age 61, right hemisphere 159.3
2572 Female, age 94, right hemisphere 159.0
1810 Male, age 48, unknown 154.2
2576 Male, age 74, both hemispheres 144.3
1930 Female, age 42, unknown 140.2
2283 Male, age 80, right hemisphere 129.7
2026 Male, age 62, unknown 126.1
2498 Male, age 66, unknown 124.3
2402 Female, age 67, both hemispheres 119.6
2492 Male, age 75, right hemisphere 117.2
2039 Female, age 72, unknown 100.1
Medial geniculate body
nTPM: 143.1
2217 Female, age 72, unknown 163.3
1811 Female, age 42, unknown 159.0
2207 Male, age 80, right hemisphere 151.8
2571 Male, age 75, right hemisphere 150.6
2650 Female, age 94, left hemisphere 149.4
2657 Male, age 74, right hemisphere 145.4
2049 Male, age 76, both hemispheres 82.5
Nucleus reuniens
nTPM: 211.8
2210 Female, age 85, left hemisphere 318.3
2205 Male, age 80, left hemisphere 165.6
2212 Female, age 67, left hemisphere 151.7
Nucleus rhomboideus
nTPM: 210.8
2280 Female, age 85, left hemisphere 334.5
2213 Female, age 67, left hemisphere 176.2
2206 Male, age 80, both hemispheres 121.9
Posterior thalamic nucleus
nTPM: 144.9
2266 Male, age 76, right hemisphere 213.1
2649 Female, age 94, both hemispheres 128.7
2495 Female, age 67, right hemisphere 128.5
2655 Male, age 74, right hemisphere 109.4
Pulvinar
nTPM: 159.1
2398 Male, age 61, left hemisphere 188.3
1899 Female, age 42, unknown 183.5
2499 Male, age 66, unknown 178.4
1972 Male, age 62, unknown 168.4
2582 Female, age 72, unknown 166.9
2214 Male, age 76, right hemisphere 153.2
1929 Male, age 48, unknown 150.2
1932 Male, age 80, right hemisphere 146.9
2496 Female, age 67, right hemisphere 135.3
2724 Male, age 74, right hemisphere 119.5
Subthalamic nucleus
nTPM: 161.0
2282 Male, age 61, both hemispheres 236.1
2658 Male, age 74, both hemispheres 207.3
2056 Female, age 72, unknown 175.5
2124 Male, age 62, unknown 172.2
2216 Male, age 48, unknown 142.9
2275 Male, age 66, unknown 136.0
2779 Female, age 42, unknown 128.6
2406 Female, age 72, unknown 89.6
Ventral posterolateral thalamic nucleus
nTPM: 157.3
2740 Male, age 76, right hemisphere 187.4
2581 Female, age 72, unknown 177.4
2578 Male, age 74, both hemispheres 163.6
2397 Male, age 61, right hemisphere 161.2
2197 Male, age 80, both hemispheres 136.9
2570 Male, age 75, right hemisphere 117.4
Ventral posteromedial thalamic nucleus
nTPM: 157.8
2202 Male, age 61, left hemisphere 211.5
2758 Male, age 80, both hemispheres 149.2
2653 Male, age 74, both hemispheres 148.2
2281 Male, age 75, right hemisphere 142.7
2127 Male, age 76, right hemisphere 137.5
Ventral thalamic nuclei
nTPM: 165.6
2652 Male, age 74, left hemisphere 195.5
2858 Female, age 72, unknown 188.2
2285 Male, age 62, unknown 175.2
2291 Female, age 72, unknown 170.8
1845 Male, age 48, unknown 168.4
1860 Male, age 76, both hemispheres 161.7
1912 Female, age 42, unknown 148.9
2580 Male, age 66, unknown 147.3
2204 Male, age 80, both hemispheres 134.0
Zona incerta
nTPM: 156.1
2215 Male, age 66, unknown 197.8
2822 Male, age 74, right hemisphere 194.9
2663 Female, age 72, unknown 132.1
2208 Male, age 80, right hemisphere 131.9
2403 Male, age 62, unknown 123.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

176.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 176.4
FF:10154-103A1 76 years, female 176.4

THALAMUS - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.4
Macaque sample Sample description nTPM
Habenula
nTPM: 36.5
Samples: 1

Max nTPM: 36.5
Min nTPM: 36.5
Sample A 36.5
Lateral thalamic nuclei
nTPM: 153.7
Samples: 2

Max nTPM: 158.1
Min nTPM: 149.3
Sample A 149.3
Sample B 158.1
Thalamus
nTPM: 161.4
Samples: 2

Max nTPM: 176.9
Min nTPM: 145.9
Sample A 176.9
Sample B 145.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.9
Pig sample Sample description nTPM
Thalamus
nTPM: 233.9
Samples: 3

Max nTPM: 253.8
Min nTPM: 196.3
Sample A Female 253.8
Sample C Male 196.3
Sample D Male 251.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 165.0
Samples: 4

Max nTPM: 181.5
Min nTPM: 139.9
Sample A 139.9
Sample B 181.5
Sample C 172.4
Sample D 166.0

THALAMUS - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.0
Rat sample Sample description nTPM
Thalamus
nTPM: 181.0
Samples: 4

Max nTPM: 193.9
Min nTPM: 162.8
Sample A 162.8
Sample A 193.9
Sample A 174.2
Sample A 193.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.