RAB7A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • RAB7A
EVOLUTIONARY SPINAL CORD Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:181.0 nTPM
HPA Brain:209.8 nTPM
GTEx:181.0 nTPM
FANTOM5:401.7 Scaled Tags Per Million
Macaque:202.1 nTPM
Mouse:258.4 nTPM
Rat:248.1 nTPM
Pig:405.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - PROTEINTALKS DB MS
Median intensity 52237
Sample Intensity
Spinal cord_01
60022
Spinal cord_02
40419
Spinal cord_03
83482
Spinal cord_04
47577
Spinal cord_05
56896
Spinal cord_06
69610
Spinal cord_07
45630
Spinal cord_08
33165

SPINAL CORD - HPA Brain Stereo-seq

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.8
Sample id Sample description nTPM
Anterior funiculus (white matter)
nTPM: 189.0
2193 Male, age 75, both hemispheres 224.0
2819 Male, age 47, both hemispheres 194.0
2818 Female, age 79, both hemispheres 176.8
2734 Male, age 80, both hemispheres 161.1
Cervical spinal cord, central gray
nTPM: 165.7
2048 Male, age 55, midline 193.6
1981 Female, age 72, midline 189.0
2816 Male, age 47, midline 150.9
2194 Female, age 79, both hemispheres 147.7
2565 Male, age 75, midline 147.5
Cervical spinal cord, dorsal horn
nTPM: 196.0
2296 Male, age 66, both hemispheres 237.6
2721 Male, age 90, both hemispheres 209.5
2173 Female, age 72, unknown 194.0
2069 Male, age 47, both hemispheres 184.8
2297 Male, age 75, both hemispheres 184.6
1877 Male, age 55, unknown 165.4
Cervical spinal cord, ventral horn
nTPM: 157.5
2098 Female, age 72, unknown 215.3
2295 Male, age 66, both hemispheres 165.2
2480 Male, age 75, both hemispheres 151.4
2820 Female, age 79, both hemispheres 140.3
2068 Male, age 55, unknown 139.0
2809 Male, age 90, both hemispheres 134.0
Dorsal funiculus (white matter)
nTPM: 196.7
2128 Male, age 75, both hemispheres 229.8
2817 Male, age 47, both hemispheres 216.1
2810 Male, age 90, both hemispheres 198.4
2064 Female, age 79, both hemispheres 188.7
2812 Male, age 66, both hemispheres 150.5
Lateral funiculus (white matter)
nTPM: 209.8
2099 Male, age 90, both hemispheres 221.6
2192 Male, age 75, both hemispheres 209.4
2294 Male, age 66, both hemispheres 209.0
2094 Female, age 79, both hemispheres 199.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 181.0
Samples: 204

Max nTPM: 282.7
Min nTPM: 94.1
Std nTPM: 24.8
Median nTPM: 180.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 282.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 247.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 246.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 244.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 234.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 224.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 223.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 223.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 222.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 222.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 219.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 217.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 217.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 216.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 216.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 216.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 213.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 213.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 213.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 212.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 211.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 211.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 211.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 211.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 210.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 209.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 209.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 208.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 208.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 208.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 206.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 206.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 206.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 206.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 205.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 205.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 204.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 204.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 203.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 202.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 202.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 201.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 201.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 200.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 200.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 198.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 198.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 198.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 197.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 197.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 197.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 196.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 195.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 195.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 194.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 194.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 193.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 193.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 192.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 191.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 191.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 191.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 189.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 188.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 188.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 188.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 188.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 188.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 188.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 188.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 188.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 187.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 186.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 186.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 186.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 186.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 185.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 185.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 185.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 185.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 185.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 184.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 184.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 184.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 184.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 184.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 184.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 184.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 183.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 183.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 183.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 183.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 183.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 183.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 182.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 182.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 181.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 181.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 181.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 180.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 180.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 180.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 179.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 179.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 179.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 179.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 179.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 179.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 178.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 178.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 178.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 177.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 177.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 177.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 176.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 176.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 176.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 175.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 174.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 173.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 173.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 173.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 173.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 172.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 172.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 172.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 172.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 171.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 171.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 171.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 171.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 171.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 171.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 171.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 170.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 170.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 170.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 170.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 170.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 169.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 169.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 168.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 168.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 168.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 167.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 166.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 166.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 166.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 166.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 166.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 165.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 165.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 164.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 164.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 164.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 163.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 163.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 163.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 163.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 163.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 162.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 162.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 162.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 162.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 161.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 161.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 160.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 160.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 160.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 160.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 159.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 159.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 158.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 158.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 158.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 157.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 157.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 157.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 156.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 154.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 153.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 153.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 152.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 150.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 150.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 149.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 149.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 147.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 146.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 145.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 145.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 144.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 144.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 143.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 143.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 142.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 141.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 139.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 139.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 137.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 124.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 123.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 121.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 94.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

401.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 401.7
FF:10159-103A6 76 years, female 428.7
FF:10181-103D1 60 years, female 374.7

SPINAL CORD - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.1
Macaque sample Sample description nTPM
Dorsal spinal cord
nTPM: 195.4
Samples: 2

Max nTPM: 210.5
Min nTPM: 180.3
Sample A 180.3
Sample B 210.5
Ventral spinal cord
nTPM: 202.1
Samples: 1

Max nTPM: 202.1
Min nTPM: 202.1
Sample A 202.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

405.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 367.5
Samples: 4

Max nTPM: 411.6
Min nTPM: 329.0
Sample A Female 329.0
Sample B Female 368.2
Sample C Male 411.6
Sample D Male 361.3
Ventral spinal cord
nTPM: 405.4
Samples: 4

Max nTPM: 424.7
Min nTPM: 380.4
Sample A Female 399.7
Sample B Female 380.4
Sample C Male 416.7
Sample D Male 424.7

SPINAL CORD - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.4
Mouse sample Sample description nTPM
Spinal cord
nTPM: 258.4
Samples: 4

Max nTPM: 267.5
Min nTPM: 250.4
Sample A 250.4
Sample B 267.5
Sample C 251.9
Sample D 263.8

SPINAL CORD - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.1
Rat sample Sample description nTPM
Ventral spinal cord
nTPM: 248.1
Samples: 4

Max nTPM: 256.5
Min nTPM: 233.5
Sample A 256.5
Sample A 252.6
Sample A 249.8
Sample A 233.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.