A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.0
nTPM
Monaco:
69.6
nTPM
Schmiedel:
32.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.0
HPA sample
nTPM
Classical monocyte nTPM: 10.5
Samples: 6
Max nTPM: 11.8
Min nTPM: 7.7
P10809_1003
7.7
P10809_1020
11.8
P10809_1039
11.1
P10809_1058
11.6
P10809_1080
9.7
P10809_1107
11.0
Intermediate monocyte nTPM: 13.9
Samples: 6
Max nTPM: 21.2
Min nTPM: 7.5
P10809_1004
12.2
P10809_1023
14.3
P10809_1042
16.1
P10809_1061
7.5
P10809_1081
12.3
P10809_1108
21.2
Non-classical monocyte nTPM: 22.1
Samples: 5
Max nTPM: 28.7
Min nTPM: 18.6
P10809_1005
18.6
P10809_1053
18.7
P10809_1072
28.7
P10809_1082
19.6
P10809_1109
24.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.6
Monaco sample
nTPM
Classical monocyte nTPM: 52.5
Samples: 4
Max nTPM: 69.9
Min nTPM: 41.9
RHH5313_R3680
44.8
RHH5221_R3593
69.9
RHH5250_R3622
53.5
RHH5279_R3651
41.9
Intermediate monocyte nTPM: 54.4
Samples: 4
Max nTPM: 66.7
Min nTPM: 41.3
RHH5314_R3681
55.7
RHH5222_R3594
66.7
RHH5251_R3623
41.3
RHH5280_R3652
53.8
Non-classical monocyte nTPM: 69.7
Samples: 4
Max nTPM: 80.2
Min nTPM: 51.5
RHH5315_R3682
51.5
RHH5223_R3595
80.2
RHH5252_R3624
70.3
RHH5281_R3653
76.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.7
Schmiedel sample id
TPM
Classical monocyte TPM: 13.3
Samples: 91
Max TPM: 19.1
Min TPM: 8.3
MONOCYTES_1
19.1
MONOCYTES_2
19.0
MONOCYTES_3
17.6
MONOCYTES_4
17.5
MONOCYTES_5
17.3
MONOCYTES_6
16.7
MONOCYTES_7
16.6
MONOCYTES_8
16.2
MONOCYTES_9
16.2
MONOCYTES_10
16.0
MONOCYTES_11
15.9
MONOCYTES_12
15.7
MONOCYTES_13
15.6
MONOCYTES_14
15.6
MONOCYTES_15
15.6
MONOCYTES_16
15.3
MONOCYTES_17
15.3
MONOCYTES_18
15.2
MONOCYTES_19
15.2
MONOCYTES_20
15.1
MONOCYTES_21
15.1
MONOCYTES_22
15.1
MONOCYTES_23
15.1
MONOCYTES_24
15.0
MONOCYTES_25
14.9
MONOCYTES_26
14.7
MONOCYTES_27
14.7
MONOCYTES_28
14.7
MONOCYTES_29
14.6
MONOCYTES_30
14.6
MONOCYTES_31
14.6
MONOCYTES_32
14.5
MONOCYTES_33
14.3
MONOCYTES_34
14.1
MONOCYTES_35
13.9
MONOCYTES_36
13.6
MONOCYTES_37
13.5
MONOCYTES_38
13.4
MONOCYTES_39
13.4
MONOCYTES_40
13.3
MONOCYTES_41
13.3
MONOCYTES_42
13.3
MONOCYTES_43
13.3
MONOCYTES_44
13.2
MONOCYTES_45
13.2
MONOCYTES_46
13.1
MONOCYTES_47
13.1
MONOCYTES_48
13.0
MONOCYTES_49
13.0
MONOCYTES_50
13.0
MONOCYTES_51
13.0
MONOCYTES_52
12.9
MONOCYTES_53
12.9
MONOCYTES_54
12.8
MONOCYTES_55
12.7
MONOCYTES_56
12.7
MONOCYTES_57
12.6
MONOCYTES_58
12.5
MONOCYTES_59
12.4
MONOCYTES_60
12.4
MONOCYTES_61
12.3
MONOCYTES_62
12.2
MONOCYTES_63
12.1
MONOCYTES_64
11.7
MONOCYTES_65
11.7
MONOCYTES_66
11.6
MONOCYTES_67
11.6
MONOCYTES_68
11.6
MONOCYTES_69
11.5
MONOCYTES_70
11.4
MONOCYTES_71
11.4
MONOCYTES_72
11.4
MONOCYTES_73
11.2
MONOCYTES_74
11.1
MONOCYTES_75
11.1
MONOCYTES_76
11.1
MONOCYTES_77
11.0
MONOCYTES_78
10.9
MONOCYTES_79
10.9
MONOCYTES_80
10.7
MONOCYTES_81
10.6
MONOCYTES_82
10.4
MONOCYTES_83
10.3
MONOCYTES_84
10.2
MONOCYTES_85
10.0
MONOCYTES_86
10.0
MONOCYTES_87
9.6
MONOCYTES_88
9.6
MONOCYTES_89
9.2
MONOCYTES_90
8.7
MONOCYTES_91
8.3
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Non-classical monocyte TPM: 32.7
Samples: 90
Max TPM: 51.5
Min TPM: 18.1
M2_1
51.5
M2_2
48.1
M2_3
47.4
M2_4
47.1
M2_5
45.8
M2_6
44.2
M2_7
43.6
M2_8
42.9
M2_9
42.7
M2_10
42.6
M2_11
40.9
M2_12
39.5
M2_13
38.9
M2_14
37.6
M2_15
37.5
M2_16
37.5
M2_17
37.5
M2_18
37.5
M2_19
37.3
M2_20
37.1
M2_21
36.8
M2_22
36.8
M2_23
36.4
M2_24
36.1
M2_25
35.9
M2_26
35.7
M2_27
35.4
M2_28
35.2
M2_29
35.2
M2_30
35.1
M2_31
34.5
M2_32
34.4
M2_33
34.4
M2_34
34.1
M2_35
34.1
M2_36
33.2
M2_37
32.7
M2_38
32.5
M2_39
32.1
M2_40
32.0
M2_41
32.0
M2_42
31.9
M2_43
31.7
M2_44
31.5
M2_45
31.4
M2_46
31.3
M2_47
31.2
M2_48
31.2
M2_49
31.2
M2_50
31.0
M2_51
30.8
M2_52
30.5
M2_53
30.4
M2_54
30.3
M2_55
30.3
M2_56
29.9
M2_57
29.7
M2_58
29.5
M2_59
29.4
M2_60
29.3
M2_61
29.1
M2_62
28.7
M2_63
28.6
M2_64
28.5
M2_65
28.4
M2_66
28.4
M2_67
28.4
M2_68
27.9
M2_69
27.8
M2_70
27.5
M2_71
27.4
M2_72
27.4
M2_73
27.4
M2_74
27.3
M2_75
27.2
M2_76
27.1
M2_77
26.9
M2_78
26.8
M2_79
26.7
M2_80
26.2
M2_81
25.9
M2_82
25.8
M2_83
25.8
M2_84
25.5
M2_85
25.5
M2_86
24.8
M2_87
24.4
M2_88
24.2
M2_89
23.5
M2_90
18.1
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