A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.7
nTPM
Monaco:
61.6
nTPM
Schmiedel:
23.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.7
HPA sample
nTPM
Classical monocyte nTPM: 6.3
Samples: 6
Max nTPM: 9.2
Min nTPM: 4.2
P10809_1003
9.2
P10809_1020
7.1
P10809_1039
4.7
P10809_1058
4.2
P10809_1080
7.4
P10809_1107
5.0
Intermediate monocyte nTPM: 5.1
Samples: 6
Max nTPM: 10.0
Min nTPM: 2.0
P10809_1004
10.0
P10809_1023
7.5
P10809_1042
3.5
P10809_1061
4.6
P10809_1081
3.2
P10809_1108
2.0
Non-classical monocyte nTPM: 7.7
Samples: 5
Max nTPM: 12.0
Min nTPM: 3.2
P10809_1005
10.0
P10809_1053
8.6
P10809_1072
12.0
P10809_1082
3.2
P10809_1109
4.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.6
Monaco sample
nTPM
Classical monocyte nTPM: 40.4
Samples: 4
Max nTPM: 57.2
Min nTPM: 22.2
RHH5313_R3680
44.1
RHH5221_R3593
22.2
RHH5250_R3622
38.1
RHH5279_R3651
57.2
Intermediate monocyte nTPM: 51.5
Samples: 4
Max nTPM: 69.4
Min nTPM: 35.2
RHH5314_R3681
69.4
RHH5222_R3594
61.6
RHH5251_R3623
35.2
RHH5280_R3652
39.9
Non-classical monocyte nTPM: 61.6
Samples: 4
Max nTPM: 78.7
Min nTPM: 48.5
RHH5315_R3682
78.7
RHH5223_R3595
59.5
RHH5252_R3624
48.5
RHH5281_R3653
59.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.6
Schmiedel sample id
TPM
Classical monocyte TPM: 14.4
Samples: 91
Max TPM: 19.1
Min TPM: 10.6
MONOCYTES_1
19.1
MONOCYTES_2
18.9
MONOCYTES_3
18.3
MONOCYTES_4
18.1
MONOCYTES_5
18.1
MONOCYTES_6
17.0
MONOCYTES_7
17.0
MONOCYTES_8
16.9
MONOCYTES_9
16.8
MONOCYTES_10
16.7
MONOCYTES_11
16.6
MONOCYTES_12
16.6
MONOCYTES_13
16.5
MONOCYTES_14
16.4
MONOCYTES_15
16.3
MONOCYTES_16
16.3
MONOCYTES_17
16.3
MONOCYTES_18
15.8
MONOCYTES_19
15.7
MONOCYTES_20
15.7
MONOCYTES_21
15.7
MONOCYTES_22
15.6
MONOCYTES_23
15.6
MONOCYTES_24
15.4
MONOCYTES_25
15.3
MONOCYTES_26
15.3
MONOCYTES_27
15.2
MONOCYTES_28
15.2
MONOCYTES_29
15.2
MONOCYTES_30
15.1
MONOCYTES_31
15.0
MONOCYTES_32
15.0
MONOCYTES_33
14.9
MONOCYTES_34
14.9
MONOCYTES_35
14.7
MONOCYTES_36
14.7
MONOCYTES_37
14.7
MONOCYTES_38
14.7
MONOCYTES_39
14.6
MONOCYTES_40
14.6
MONOCYTES_41
14.6
MONOCYTES_42
14.5
MONOCYTES_43
14.5
MONOCYTES_44
14.5
MONOCYTES_45
14.4
MONOCYTES_46
14.4
MONOCYTES_47
14.3
MONOCYTES_48
14.2
MONOCYTES_49
14.2
MONOCYTES_50
14.1
MONOCYTES_51
14.1
MONOCYTES_52
14.1
MONOCYTES_53
14.1
MONOCYTES_54
14.1
MONOCYTES_55
14.1
MONOCYTES_56
14.0
MONOCYTES_57
14.0
MONOCYTES_58
14.0
MONOCYTES_59
13.9
MONOCYTES_60
13.9
MONOCYTES_61
13.8
MONOCYTES_62
13.7
MONOCYTES_63
13.7
MONOCYTES_64
13.5
MONOCYTES_65
13.4
MONOCYTES_66
13.4
MONOCYTES_67
13.4
MONOCYTES_68
13.3
MONOCYTES_69
13.1
MONOCYTES_70
13.1
MONOCYTES_71
13.0
MONOCYTES_72
13.0
MONOCYTES_73
13.0
MONOCYTES_74
13.0
MONOCYTES_75
13.0
MONOCYTES_76
12.9
MONOCYTES_77
12.8
MONOCYTES_78
12.5
MONOCYTES_79
12.5
MONOCYTES_80
12.4
MONOCYTES_81
12.3
MONOCYTES_82
12.3
MONOCYTES_83
11.9
MONOCYTES_84
11.9
MONOCYTES_85
11.7
MONOCYTES_86
11.6
MONOCYTES_87
11.6
MONOCYTES_88
11.5
MONOCYTES_89
11.2
MONOCYTES_90
10.7
MONOCYTES_91
10.6
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Non-classical monocyte TPM: 23.6
Samples: 90
Max TPM: 28.8
Min TPM: 16.0
M2_1
28.8
M2_2
28.7
M2_3
28.7
M2_4
27.6
M2_5
27.6
M2_6
27.2
M2_7
27.1
M2_8
26.9
M2_9
26.4
M2_10
26.3
M2_11
26.2
M2_12
26.2
M2_13
26.2
M2_14
26.1
M2_15
26.0
M2_16
26.0
M2_17
25.9
M2_18
25.8
M2_19
25.6
M2_20
25.4
M2_21
25.4
M2_22
25.2
M2_23
25.1
M2_24
25.0
M2_25
24.9
M2_26
24.9
M2_27
24.8
M2_28
24.7
M2_29
24.6
M2_30
24.6
M2_31
24.4
M2_32
24.4
M2_33
24.3
M2_34
24.2
M2_35
24.2
M2_36
24.1
M2_37
24.1
M2_38
24.0
M2_39
24.0
M2_40
23.9
M2_41
23.8
M2_42
23.7
M2_43
23.7
M2_44
23.5
M2_45
23.5
M2_46
23.4
M2_47
23.3
M2_48
23.3
M2_49
23.3
M2_50
23.2
M2_51
23.2
M2_52
23.1
M2_53
23.1
M2_54
23.1
M2_55
23.0
M2_56
23.0
M2_57
22.9
M2_58
22.9
M2_59
22.6
M2_60
22.6
M2_61
22.5
M2_62
22.5
M2_63
22.3
M2_64
22.2
M2_65
22.2
M2_66
22.2
M2_67
22.1
M2_68
22.1
M2_69
22.1
M2_70
22.0
M2_71
22.0
M2_72
21.9
M2_73
21.7
M2_74
21.7
M2_75
21.7
M2_76
21.6
M2_77
21.5
M2_78
21.5
M2_79
21.5
M2_80
21.3
M2_81
21.2
M2_82
20.8
M2_83
20.7
M2_84
20.3
M2_85
19.8
M2_86
19.7
M2_87
19.3
M2_88
19.0
M2_89
18.5
M2_90
16.0
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