A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
41.6
nTPM
Monaco:
20.3
nTPM
Schmiedel:
11.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.6
HPA sample
nTPM
Classical monocyte nTPM: 41.4
Samples: 6
Max nTPM: 63.7
Min nTPM: 25.7
P10809_1003
25.7
P10809_1020
46.5
P10809_1039
63.7
P10809_1058
36.3
P10809_1080
36.8
P10809_1107
39.2
Intermediate monocyte nTPM: 41.6
Samples: 6
Max nTPM: 55.2
Min nTPM: 23.5
P10809_1004
23.5
P10809_1023
48.4
P10809_1042
39.2
P10809_1061
55.2
P10809_1081
40.0
P10809_1108
43.2
Non-classical monocyte nTPM: 31.7
Samples: 5
Max nTPM: 39.6
Min nTPM: 22.3
P10809_1005
22.3
P10809_1053
34.0
P10809_1072
38.7
P10809_1082
23.7
P10809_1109
39.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.3
Monaco sample
nTPM
Classical monocyte nTPM: 20.0
Samples: 4
Max nTPM: 23.8
Min nTPM: 16.2
RHH5313_R3680
18.3
RHH5221_R3593
21.7
RHH5250_R3622
23.8
RHH5279_R3651
16.2
Intermediate monocyte nTPM: 20.3
Samples: 4
Max nTPM: 33.4
Min nTPM: 13.7
RHH5314_R3681
33.4
RHH5222_R3594
13.7
RHH5251_R3623
15.1
RHH5280_R3652
19.0
Non-classical monocyte nTPM: 12.4
Samples: 4
Max nTPM: 22.1
Min nTPM: 8.5
RHH5315_R3682
8.7
RHH5223_R3595
8.5
RHH5252_R3624
10.4
RHH5281_R3653
22.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.9
Schmiedel sample id
TPM
Classical monocyte TPM: 10.5
Samples: 91
Max TPM: 15.1
Min TPM: 8.2
MONOCYTES_1
15.1
MONOCYTES_2
13.4
MONOCYTES_3
12.8
MONOCYTES_4
12.6
MONOCYTES_5
12.5
MONOCYTES_6
12.4
MONOCYTES_7
12.0
MONOCYTES_8
11.9
MONOCYTES_9
11.9
MONOCYTES_10
11.9
MONOCYTES_11
11.8
MONOCYTES_12
11.8
MONOCYTES_13
11.6
MONOCYTES_14
11.6
MONOCYTES_15
11.6
MONOCYTES_16
11.6
MONOCYTES_17
11.5
MONOCYTES_18
11.5
MONOCYTES_19
11.3
MONOCYTES_20
11.3
MONOCYTES_21
11.3
MONOCYTES_22
11.3
MONOCYTES_23
11.2
MONOCYTES_24
11.2
MONOCYTES_25
11.2
MONOCYTES_26
11.2
MONOCYTES_27
11.2
MONOCYTES_28
11.1
MONOCYTES_29
11.1
MONOCYTES_30
11.1
MONOCYTES_31
11.0
MONOCYTES_32
11.0
MONOCYTES_33
11.0
MONOCYTES_34
10.9
MONOCYTES_35
10.9
MONOCYTES_36
10.8
MONOCYTES_37
10.7
MONOCYTES_38
10.7
MONOCYTES_39
10.7
MONOCYTES_40
10.7
MONOCYTES_41
10.6
MONOCYTES_42
10.5
MONOCYTES_43
10.5
MONOCYTES_44
10.4
MONOCYTES_45
10.4
MONOCYTES_46
10.4
MONOCYTES_47
10.4
MONOCYTES_48
10.3
MONOCYTES_49
10.3
MONOCYTES_50
10.3
MONOCYTES_51
10.3
MONOCYTES_52
10.3
MONOCYTES_53
10.3
MONOCYTES_54
10.2
MONOCYTES_55
10.2
MONOCYTES_56
10.2
MONOCYTES_57
10.1
MONOCYTES_58
10.1
MONOCYTES_59
10.1
MONOCYTES_60
10.0
MONOCYTES_61
9.9
MONOCYTES_62
9.9
MONOCYTES_63
9.8
MONOCYTES_64
9.8
MONOCYTES_65
9.7
MONOCYTES_66
9.7
MONOCYTES_67
9.7
MONOCYTES_68
9.6
MONOCYTES_69
9.6
MONOCYTES_70
9.6
MONOCYTES_71
9.6
MONOCYTES_72
9.4
MONOCYTES_73
9.4
MONOCYTES_74
9.4
MONOCYTES_75
9.4
MONOCYTES_76
9.4
MONOCYTES_77
9.3
MONOCYTES_78
9.2
MONOCYTES_79
9.2
MONOCYTES_80
9.1
MONOCYTES_81
9.1
MONOCYTES_82
9.1
MONOCYTES_83
9.0
MONOCYTES_84
8.9
MONOCYTES_85
8.8
MONOCYTES_86
8.8
MONOCYTES_87
8.7
MONOCYTES_88
8.6
MONOCYTES_89
8.6
MONOCYTES_90
8.4
MONOCYTES_91
8.2
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Non-classical monocyte TPM: 11.9
Samples: 90
Max TPM: 16.4
Min TPM: 9.1
M2_1
16.4
M2_2
15.7
M2_3
15.3
M2_4
15.0
M2_5
14.8
M2_6
14.8
M2_7
14.5
M2_8
14.5
M2_9
14.0
M2_10
13.7
M2_11
13.5
M2_12
13.5
M2_13
13.3
M2_14
13.2
M2_15
12.9
M2_16
12.8
M2_17
12.8
M2_18
12.8
M2_19
12.8
M2_20
12.8
M2_21
12.8
M2_22
12.7
M2_23
12.7
M2_24
12.7
M2_25
12.7
M2_26
12.7
M2_27
12.5
M2_28
12.5
M2_29
12.4
M2_30
12.4
M2_31
12.3
M2_32
12.3
M2_33
12.3
M2_34
12.3
M2_35
12.2
M2_36
12.2
M2_37
12.1
M2_38
12.0
M2_39
12.0
M2_40
12.0
M2_41
12.0
M2_42
11.9
M2_43
11.8
M2_44
11.8
M2_45
11.7
M2_46
11.7
M2_47
11.7
M2_48
11.7
M2_49
11.7
M2_50
11.6
M2_51
11.6
M2_52
11.6
M2_53
11.5
M2_54
11.5
M2_55
11.5
M2_56
11.4
M2_57
11.4
M2_58
11.4
M2_59
11.3
M2_60
11.2
M2_61
11.2
M2_62
11.0
M2_63
11.0
M2_64
11.0
M2_65
11.0
M2_66
10.9
M2_67
10.8
M2_68
10.8
M2_69
10.7
M2_70
10.7
M2_71
10.6
M2_72
10.6
M2_73
10.5
M2_74
10.5
M2_75
10.5
M2_76
10.5
M2_77
10.5
M2_78
10.4
M2_79
10.4
M2_80
10.4
M2_81
10.4
M2_82
10.4
M2_83
10.3
M2_84
10.0
M2_85
9.9
M2_86
9.8
M2_87
9.7
M2_88
9.5
M2_89
9.2
M2_90
9.1
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