A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.3
nTPM
Monaco:
61.8
nTPM
Schmiedel:
32.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.3
HPA sample
nTPM
NK-cell nTPM: 22.3
Samples: 6
Max nTPM: 30.2
Min nTPM: 14.7
P10809_1013
29.7
P10809_1033
18.6
P10809_1052
14.7
P10809_1071
24.0
P10809_1093
30.2
P10809_1103
16.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.8
Monaco sample
nTPM
NK-cell nTPM: 61.8
Samples: 4
Max nTPM: 70.7
Min nTPM: 54.3
RHH5316_R3683
61.7
RHH5224_R3596
70.7
RHH5253_R3625
60.6
RHH5282_R3654
54.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.4
Schmiedel sample id
TPM
NK-cell TPM: 32.4
Samples: 90
Max TPM: 52.4
Min TPM: 16.1
NK_1
52.4
NK_2
46.2
NK_3
45.9
NK_4
45.3
NK_5
44.5
NK_6
43.6
NK_7
43.2
NK_8
43.0
NK_9
41.8
NK_10
41.4
NK_11
39.6
NK_12
39.3
NK_13
39.2
NK_14
39.0
NK_15
38.9
NK_16
38.4
NK_17
38.3
NK_18
37.8
NK_19
37.3
NK_20
37.2
NK_21
37.1
NK_22
36.5
NK_23
36.3
NK_24
36.2
NK_25
35.9
NK_26
35.5
NK_27
35.3
NK_28
35.2
NK_29
35.0
NK_30
34.6
NK_31
34.4
NK_32
34.3
NK_33
33.7
NK_34
33.5
NK_35
33.5
NK_36
33.5
NK_37
33.2
NK_38
32.8
NK_39
32.4
NK_40
32.3
NK_41
32.2
NK_42
32.1
NK_43
32.0
NK_44
32.0
NK_45
31.9
NK_46
31.9
NK_47
31.6
NK_48
31.5
NK_49
31.5
NK_50
31.4
NK_51
31.2
NK_52
31.2
NK_53
31.2
NK_54
31.1
NK_55
31.0
NK_56
31.0
NK_57
30.9
NK_58
30.7
NK_59
30.6
NK_60
30.6
NK_61
29.7
NK_62
29.7
NK_63
29.6
NK_64
29.0
NK_65
28.5
NK_66
28.3
NK_67
28.2
NK_68
28.1
NK_69
28.0
NK_70
27.3
NK_71
27.1
NK_72
27.1
NK_73
27.0
NK_74
25.8
NK_75
25.6
NK_76
25.6
NK_77
25.5
NK_78
25.4
NK_79
25.4
NK_80
24.6
NK_81
24.2
NK_82
24.2
NK_83
24.1
NK_84
23.7
NK_85
23.4
NK_86
21.0
NK_87
20.6
NK_88
19.2
NK_89
18.5
NK_90
16.1
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