A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.6
nTPM
Monaco:
44.2
nTPM
Schmiedel:
21.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.6
HPA sample
nTPM
Classical monocyte nTPM: 15.3
Samples: 6
Max nTPM: 22.0
Min nTPM: 10.5
P10809_1003
13.2
P10809_1020
22.0
P10809_1039
19.0
P10809_1058
12.6
P10809_1080
14.7
P10809_1107
10.5
Intermediate monocyte nTPM: 13.7
Samples: 6
Max nTPM: 17.3
Min nTPM: 8.0
P10809_1004
14.3
P10809_1023
17.3
P10809_1042
8.0
P10809_1061
16.1
P10809_1081
12.6
P10809_1108
13.8
Non-classical monocyte nTPM: 16.6
Samples: 5
Max nTPM: 33.6
Min nTPM: 9.6
P10809_1005
9.6
P10809_1053
14.6
P10809_1072
33.6
P10809_1082
10.9
P10809_1109
14.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.2
Monaco sample
nTPM
Classical monocyte nTPM: 38.2
Samples: 4
Max nTPM: 49.6
Min nTPM: 20.3
RHH5313_R3680
49.6
RHH5221_R3593
20.3
RHH5250_R3622
37.4
RHH5279_R3651
45.4
Intermediate monocyte nTPM: 36.2
Samples: 4
Max nTPM: 42.7
Min nTPM: 26.7
RHH5314_R3681
37.7
RHH5222_R3594
37.6
RHH5251_R3623
26.7
RHH5280_R3652
42.7
Non-classical monocyte nTPM: 44.3
Samples: 4
Max nTPM: 57.0
Min nTPM: 37.4
RHH5315_R3682
37.4
RHH5223_R3595
57.0
RHH5252_R3624
42.6
RHH5281_R3653
40.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.4
Schmiedel sample id
TPM
Classical monocyte TPM: 16.6
Samples: 91
Max TPM: 23.0
Min TPM: 11.0
MONOCYTES_1
23.0
MONOCYTES_2
22.5
MONOCYTES_3
21.6
MONOCYTES_4
21.5
MONOCYTES_5
21.2
MONOCYTES_6
21.0
MONOCYTES_7
21.0
MONOCYTES_8
20.9
MONOCYTES_9
20.9
MONOCYTES_10
20.7
MONOCYTES_11
20.5
MONOCYTES_12
20.5
MONOCYTES_13
20.2
MONOCYTES_14
20.0
MONOCYTES_15
19.4
MONOCYTES_16
19.2
MONOCYTES_17
19.1
MONOCYTES_18
19.1
MONOCYTES_19
19.1
MONOCYTES_20
18.9
MONOCYTES_21
18.8
MONOCYTES_22
18.6
MONOCYTES_23
18.6
MONOCYTES_24
18.4
MONOCYTES_25
18.4
MONOCYTES_26
18.3
MONOCYTES_27
18.1
MONOCYTES_28
17.7
MONOCYTES_29
17.6
MONOCYTES_30
17.5
MONOCYTES_31
17.4
MONOCYTES_32
17.4
MONOCYTES_33
17.3
MONOCYTES_34
17.2
MONOCYTES_35
17.0
MONOCYTES_36
17.0
MONOCYTES_37
16.9
MONOCYTES_38
16.9
MONOCYTES_39
16.9
MONOCYTES_40
16.7
MONOCYTES_41
16.7
MONOCYTES_42
16.6
MONOCYTES_43
16.6
MONOCYTES_44
16.6
MONOCYTES_45
16.2
MONOCYTES_46
16.2
MONOCYTES_47
16.2
MONOCYTES_48
16.1
MONOCYTES_49
15.7
MONOCYTES_50
15.7
MONOCYTES_51
15.7
MONOCYTES_52
15.6
MONOCYTES_53
15.6
MONOCYTES_54
15.6
MONOCYTES_55
15.5
MONOCYTES_56
15.4
MONOCYTES_57
15.4
MONOCYTES_58
15.3
MONOCYTES_59
15.3
MONOCYTES_60
15.2
MONOCYTES_61
15.1
MONOCYTES_62
14.9
MONOCYTES_63
14.9
MONOCYTES_64
14.9
MONOCYTES_65
14.8
MONOCYTES_66
14.7
MONOCYTES_67
14.6
MONOCYTES_68
14.6
MONOCYTES_69
14.5
MONOCYTES_70
14.5
MONOCYTES_71
14.4
MONOCYTES_72
14.4
MONOCYTES_73
14.4
MONOCYTES_74
14.3
MONOCYTES_75
14.2
MONOCYTES_76
14.1
MONOCYTES_77
14.1
MONOCYTES_78
14.1
MONOCYTES_79
13.7
MONOCYTES_80
13.5
MONOCYTES_81
13.4
MONOCYTES_82
13.3
MONOCYTES_83
13.2
MONOCYTES_84
13.0
MONOCYTES_85
12.9
MONOCYTES_86
12.6
MONOCYTES_87
12.6
MONOCYTES_88
12.4
MONOCYTES_89
12.3
MONOCYTES_90
11.0
MONOCYTES_91
11.0
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Non-classical monocyte TPM: 21.4
Samples: 90
Max TPM: 37.2
Min TPM: 11.3
M2_1
37.2
M2_2
34.8
M2_3
33.8
M2_4
33.1
M2_5
29.1
M2_6
28.7
M2_7
28.1
M2_8
27.6
M2_9
27.6
M2_10
27.6
M2_11
27.0
M2_12
26.3
M2_13
25.7
M2_14
25.5
M2_15
25.4
M2_16
25.4
M2_17
24.9
M2_18
24.9
M2_19
24.4
M2_20
24.1
M2_21
24.1
M2_22
23.8
M2_23
23.8
M2_24
23.5
M2_25
23.4
M2_26
23.2
M2_27
23.1
M2_28
22.7
M2_29
22.6
M2_30
22.5
M2_31
22.5
M2_32
22.2
M2_33
22.2
M2_34
22.1
M2_35
22.0
M2_36
21.9
M2_37
21.8
M2_38
21.6
M2_39
21.6
M2_40
21.5
M2_41
21.4
M2_42
21.3
M2_43
21.2
M2_44
21.2
M2_45
21.0
M2_46
21.0
M2_47
20.9
M2_48
20.8
M2_49
20.8
M2_50
20.7
M2_51
20.6
M2_52
20.4
M2_53
20.3
M2_54
20.1
M2_55
19.7
M2_56
19.6
M2_57
19.5
M2_58
19.5
M2_59
19.2
M2_60
19.2
M2_61
19.2
M2_62
19.1
M2_63
19.1
M2_64
18.8
M2_65
18.6
M2_66
18.6
M2_67
18.4
M2_68
18.4
M2_69
18.1
M2_70
18.1
M2_71
18.0
M2_72
17.9
M2_73
17.8
M2_74
17.5
M2_75
17.3
M2_76
17.3
M2_77
17.3
M2_78
17.2
M2_79
17.1
M2_80
16.7
M2_81
16.5
M2_82
16.4
M2_83
15.9
M2_84
15.7
M2_85
15.0
M2_86
14.7
M2_87
14.5
M2_88
14.4
M2_89
12.3
M2_90
11.3
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