A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.7
nTPM
Monaco:
19.8
nTPM
Schmiedel:
19.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.7
HPA sample
nTPM
Classical monocyte nTPM: 4.7
Samples: 6
Max nTPM: 6.6
Min nTPM: 1.2
P10809_1003
5.2
P10809_1020
2.6
P10809_1039
6.0
P10809_1058
1.2
P10809_1080
6.6
P10809_1107
6.5
Intermediate monocyte nTPM: 1.4
Samples: 6
Max nTPM: 3.6
Min nTPM: 0.2
P10809_1004
3.6
P10809_1023
0.2
P10809_1042
1.1
P10809_1061
0.9
P10809_1081
1.2
P10809_1108
1.2
Non-classical monocyte nTPM: 0.3
Samples: 5
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.4
P10809_1072
0.1
P10809_1082
0.9
P10809_1109
0.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.8
Monaco sample
nTPM
Classical monocyte nTPM: 19.8
Samples: 4
Max nTPM: 28.6
Min nTPM: 13.8
RHH5313_R3680
14.5
RHH5221_R3593
22.2
RHH5250_R3622
13.8
RHH5279_R3651
28.6
Intermediate monocyte nTPM: 4.6
Samples: 4
Max nTPM: 6.3
Min nTPM: 3.3
RHH5314_R3681
6.3
RHH5222_R3594
3.3
RHH5251_R3623
4.0
RHH5280_R3652
4.7
Non-classical monocyte nTPM: 2.0
Samples: 4
Max nTPM: 3.1
Min nTPM: 1.2
RHH5315_R3682
3.1
RHH5223_R3595
2.1
RHH5252_R3624
1.2
RHH5281_R3653
1.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.1
Schmiedel sample id
TPM
Classical monocyte TPM: 19.1
Samples: 91
Max TPM: 29.0
Min TPM: 11.8
MONOCYTES_1
29.0
MONOCYTES_2
28.6
MONOCYTES_3
28.4
MONOCYTES_4
27.9
MONOCYTES_5
24.7
MONOCYTES_6
24.4
MONOCYTES_7
24.2
MONOCYTES_8
24.1
MONOCYTES_9
24.1
MONOCYTES_10
23.8
MONOCYTES_11
23.2
MONOCYTES_12
22.6
MONOCYTES_13
22.3
MONOCYTES_14
22.1
MONOCYTES_15
22.0
MONOCYTES_16
22.0
MONOCYTES_17
21.9
MONOCYTES_18
21.7
MONOCYTES_19
21.7
MONOCYTES_20
21.6
MONOCYTES_21
21.5
MONOCYTES_22
21.5
MONOCYTES_23
21.2
MONOCYTES_24
20.9
MONOCYTES_25
20.8
MONOCYTES_26
20.8
MONOCYTES_27
20.7
MONOCYTES_28
20.6
MONOCYTES_29
20.4
MONOCYTES_30
20.4
MONOCYTES_31
20.4
MONOCYTES_32
20.3
MONOCYTES_33
20.2
MONOCYTES_34
20.1
MONOCYTES_35
20.0
MONOCYTES_36
20.0
MONOCYTES_37
19.9
MONOCYTES_38
19.9
MONOCYTES_39
19.9
MONOCYTES_40
19.8
MONOCYTES_41
19.7
MONOCYTES_42
19.7
MONOCYTES_43
19.5
MONOCYTES_44
19.5
MONOCYTES_45
19.5
MONOCYTES_46
19.1
MONOCYTES_47
19.0
MONOCYTES_48
18.9
MONOCYTES_49
18.8
MONOCYTES_50
18.8
MONOCYTES_51
18.7
MONOCYTES_52
18.6
MONOCYTES_53
18.6
MONOCYTES_54
18.3
MONOCYTES_55
18.3
MONOCYTES_56
18.2
MONOCYTES_57
18.1
MONOCYTES_58
18.1
MONOCYTES_59
18.0
MONOCYTES_60
17.9
MONOCYTES_61
17.5
MONOCYTES_62
17.4
MONOCYTES_63
17.2
MONOCYTES_64
17.0
MONOCYTES_65
16.9
MONOCYTES_66
16.9
MONOCYTES_67
16.9
MONOCYTES_68
16.8
MONOCYTES_69
16.7
MONOCYTES_70
16.6
MONOCYTES_71
16.4
MONOCYTES_72
16.4
MONOCYTES_73
16.2
MONOCYTES_74
15.9
MONOCYTES_75
15.8
MONOCYTES_76
15.7
MONOCYTES_77
15.3
MONOCYTES_78
15.3
MONOCYTES_79
15.1
MONOCYTES_80
15.0
MONOCYTES_81
14.9
MONOCYTES_82
14.2
MONOCYTES_83
13.9
MONOCYTES_84
13.6
MONOCYTES_85
13.6
MONOCYTES_86
13.6
MONOCYTES_87
12.8
MONOCYTES_88
12.8
MONOCYTES_89
12.8
MONOCYTES_90
11.8
MONOCYTES_91
11.8
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Non-classical monocyte TPM: 1.0
Samples: 90
Max TPM: 3.3
Min TPM: 0.5
M2_1
3.3
M2_2
1.7
M2_3
1.6
M2_4
1.6
M2_5
1.6
M2_6
1.5
M2_7
1.5
M2_8
1.5
M2_9
1.4
M2_10
1.4
M2_11
1.4
M2_12
1.4
M2_13
1.4
M2_14
1.4
M2_15
1.4
M2_16
1.3
M2_17
1.3
M2_18
1.3
M2_19
1.3
M2_20
1.3
M2_21
1.3
M2_22
1.3
M2_23
1.3
M2_24
1.3
M2_25
1.2
M2_26
1.2
M2_27
1.2
M2_28
1.2
M2_29
1.2
M2_30
1.2
M2_31
1.2
M2_32
1.2
M2_33
1.2
M2_34
1.2
M2_35
1.1
M2_36
1.1
M2_37
1.1
M2_38
1.1
M2_39
1.1
M2_40
1.1
M2_41
1.1
M2_42
1.0
M2_43
1.0
M2_44
1.0
M2_45
1.0
M2_46
1.0
M2_47
1.0
M2_48
1.0
M2_49
1.0
M2_50
0.9
M2_51
0.9
M2_52
0.9
M2_53
0.9
M2_54
0.9
M2_55
0.9
M2_56
0.8
M2_57
0.8
M2_58
0.8
M2_59
0.8
M2_60
0.8
M2_61
0.8
M2_62
0.8
M2_63
0.8
M2_64
0.8
M2_65
0.8
M2_66
0.8
M2_67
0.8
M2_68
0.8
M2_69
0.8
M2_70
0.8
M2_71
0.8
M2_72
0.8
M2_73
0.7
M2_74
0.7
M2_75
0.7
M2_76
0.7
M2_77
0.7
M2_78
0.7
M2_79
0.7
M2_80
0.7
M2_81
0.7
M2_82
0.7
M2_83
0.6
M2_84
0.6
M2_85
0.6
M2_86
0.6
M2_87
0.6
M2_88
0.5
M2_89
0.5
M2_90
0.5
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