A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.1
nTPM
Monaco:
4.6
nTPM
Schmiedel:
28.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.1
HPA sample
nTPM
Classical monocyte nTPM: 0.1
Samples: 6
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.0
P10809_1039
0.0
P10809_1058
0.3
P10809_1080
0.3
P10809_1107
0.1
Intermediate monocyte nTPM: 0.1
Samples: 6
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1004
0.1
P10809_1023
0.2
P10809_1042
0.0
P10809_1061
0.3
P10809_1081
0.0
P10809_1108
0.0
Non-classical monocyte nTPM: 0.1
Samples: 5
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1005
0.3
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.6
Monaco sample
nTPM
Classical monocyte nTPM: 2.6
Samples: 4
Max nTPM: 3.8
Min nTPM: 2.2
RHH5313_R3680
2.4
RHH5221_R3593
2.2
RHH5250_R3622
3.8
RHH5279_R3651
2.2
Intermediate monocyte nTPM: 4.6
Samples: 4
Max nTPM: 8.5
Min nTPM: 1.2
RHH5314_R3681
1.2
RHH5222_R3594
1.6
RHH5251_R3623
6.9
RHH5280_R3652
8.5
Non-classical monocyte nTPM: 4.2
Samples: 4
Max nTPM: 5.9
Min nTPM: 2.1
RHH5315_R3682
3.2
RHH5223_R3595
2.1
RHH5252_R3624
5.9
RHH5281_R3653
5.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.8
Schmiedel sample id
TPM
Classical monocyte TPM: 25.2
Samples: 91
Max TPM: 43.0
Min TPM: 12.6
MONOCYTES_1
43.0
MONOCYTES_2
38.5
MONOCYTES_3
38.4
MONOCYTES_4
36.8
MONOCYTES_5
35.8
MONOCYTES_6
35.5
MONOCYTES_7
35.4
MONOCYTES_8
34.7
MONOCYTES_9
34.7
MONOCYTES_10
34.5
MONOCYTES_11
34.4
MONOCYTES_12
34.2
MONOCYTES_13
33.0
MONOCYTES_14
32.7
MONOCYTES_15
32.5
MONOCYTES_16
32.2
MONOCYTES_17
31.4
MONOCYTES_18
31.3
MONOCYTES_19
31.3
MONOCYTES_20
31.1
MONOCYTES_21
31.0
MONOCYTES_22
30.6
MONOCYTES_23
30.3
MONOCYTES_24
30.3
MONOCYTES_25
30.1
MONOCYTES_26
30.1
MONOCYTES_27
30.0
MONOCYTES_28
29.6
MONOCYTES_29
29.3
MONOCYTES_30
29.2
MONOCYTES_31
29.1
MONOCYTES_32
28.8
MONOCYTES_33
28.3
MONOCYTES_34
26.9
MONOCYTES_35
26.9
MONOCYTES_36
26.8
MONOCYTES_37
26.7
MONOCYTES_38
26.4
MONOCYTES_39
26.4
MONOCYTES_40
26.4
MONOCYTES_41
26.3
MONOCYTES_42
26.2
MONOCYTES_43
25.5
MONOCYTES_44
24.8
MONOCYTES_45
24.8
MONOCYTES_46
24.7
MONOCYTES_47
24.6
MONOCYTES_48
24.4
MONOCYTES_49
24.0
MONOCYTES_50
23.7
MONOCYTES_51
23.5
MONOCYTES_52
23.2
MONOCYTES_53
23.1
MONOCYTES_54
23.0
MONOCYTES_55
22.8
MONOCYTES_56
22.8
MONOCYTES_57
22.7
MONOCYTES_58
22.6
MONOCYTES_59
22.5
MONOCYTES_60
22.5
MONOCYTES_61
22.5
MONOCYTES_62
22.3
MONOCYTES_63
21.9
MONOCYTES_64
21.6
MONOCYTES_65
21.3
MONOCYTES_66
21.0
MONOCYTES_67
20.8
MONOCYTES_68
20.7
MONOCYTES_69
20.4
MONOCYTES_70
20.4
MONOCYTES_71
20.1
MONOCYTES_72
19.8
MONOCYTES_73
19.6
MONOCYTES_74
19.0
MONOCYTES_75
18.6
MONOCYTES_76
18.5
MONOCYTES_77
18.5
MONOCYTES_78
17.4
MONOCYTES_79
16.5
MONOCYTES_80
16.4
MONOCYTES_81
15.7
MONOCYTES_82
15.7
MONOCYTES_83
15.1
MONOCYTES_84
14.8
MONOCYTES_85
14.3
MONOCYTES_86
14.2
MONOCYTES_87
14.1
MONOCYTES_88
13.6
MONOCYTES_89
13.1
MONOCYTES_90
12.9
MONOCYTES_91
12.6
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Non-classical monocyte TPM: 28.8
Samples: 90
Max TPM: 61.3
Min TPM: 7.5
M2_1
61.3
M2_2
47.7
M2_3
47.3
M2_4
47.1
M2_5
46.3
M2_6
46.2
M2_7
45.3
M2_8
43.8
M2_9
43.0
M2_10
42.8
M2_11
42.7
M2_12
42.2
M2_13
41.4
M2_14
41.3
M2_15
39.5
M2_16
39.4
M2_17
38.3
M2_18
37.4
M2_19
37.2
M2_20
37.0
M2_21
35.9
M2_22
35.0
M2_23
34.7
M2_24
34.3
M2_25
34.1
M2_26
34.0
M2_27
33.7
M2_28
33.7
M2_29
33.4
M2_30
33.3
M2_31
33.3
M2_32
33.1
M2_33
32.8
M2_34
32.7
M2_35
32.1
M2_36
31.8
M2_37
31.8
M2_38
31.5
M2_39
31.5
M2_40
31.5
M2_41
31.3
M2_42
31.0
M2_43
30.5
M2_44
29.7
M2_45
29.6
M2_46
29.5
M2_47
28.9
M2_48
28.6
M2_49
28.5
M2_50
28.3
M2_51
28.0
M2_52
27.9
M2_53
27.7
M2_54
27.5
M2_55
26.7
M2_56
26.5
M2_57
26.0
M2_58
26.0
M2_59
25.6
M2_60
25.6
M2_61
24.8
M2_62
24.3
M2_63
24.0
M2_64
23.7
M2_65
23.3
M2_66
22.8
M2_67
20.6
M2_68
19.6
M2_69
19.3
M2_70
18.9
M2_71
18.9
M2_72
18.7
M2_73
18.5
M2_74
17.9
M2_75
17.7
M2_76
15.7
M2_77
15.3
M2_78
14.7
M2_79
14.7
M2_80
14.1
M2_81
14.0
M2_82
13.7
M2_83
13.6
M2_84
13.2
M2_85
12.1
M2_86
11.9
M2_87
10.2
M2_88
8.8
M2_89
8.2
M2_90
7.5
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