A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.5
nTPM
Monaco:
69.6
nTPM
Schmiedel:
64.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.5
HPA sample
nTPM
Classical monocyte nTPM: 12.7
Samples: 6
Max nTPM: 21.3
Min nTPM: 7.5
P10809_1003
13.3
P10809_1020
21.3
P10809_1039
16.3
P10809_1058
7.5
P10809_1080
8.6
P10809_1107
9.0
Intermediate monocyte nTPM: 22.8
Samples: 6
Max nTPM: 33.6
Min nTPM: 15.6
P10809_1004
17.3
P10809_1023
33.6
P10809_1042
27.7
P10809_1061
20.7
P10809_1081
15.6
P10809_1108
21.6
Non-classical monocyte nTPM: 29.5
Samples: 5
Max nTPM: 46.1
Min nTPM: 19.0
P10809_1005
28.0
P10809_1053
33.6
P10809_1072
46.1
P10809_1082
20.8
P10809_1109
19.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.6
Monaco sample
nTPM
Classical monocyte nTPM: 27.3
Samples: 4
Max nTPM: 32.2
Min nTPM: 18.1
RHH5313_R3680
31.6
RHH5221_R3593
27.4
RHH5250_R3622
18.1
RHH5279_R3651
32.2
Intermediate monocyte nTPM: 50.1
Samples: 4
Max nTPM: 57.8
Min nTPM: 36.2
RHH5314_R3681
51.5
RHH5222_R3594
55.0
RHH5251_R3623
57.8
RHH5280_R3652
36.2
Non-classical monocyte nTPM: 69.6
Samples: 4
Max nTPM: 81.3
Min nTPM: 54.5
RHH5315_R3682
69.2
RHH5223_R3595
81.3
RHH5252_R3624
73.2
RHH5281_R3653
54.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.6
Schmiedel sample id
TPM
Classical monocyte TPM: 25.8
Samples: 91
Max TPM: 34.3
Min TPM: 18.8
MONOCYTES_1
34.3
MONOCYTES_2
32.9
MONOCYTES_3
32.9
MONOCYTES_4
32.4
MONOCYTES_5
32.3
MONOCYTES_6
32.0
MONOCYTES_7
31.6
MONOCYTES_8
31.4
MONOCYTES_9
30.8
MONOCYTES_10
30.6
MONOCYTES_11
30.4
MONOCYTES_12
30.4
MONOCYTES_13
30.3
MONOCYTES_14
30.2
MONOCYTES_15
30.0
MONOCYTES_16
30.0
MONOCYTES_17
29.9
MONOCYTES_18
29.4
MONOCYTES_19
29.1
MONOCYTES_20
28.9
MONOCYTES_21
28.8
MONOCYTES_22
28.8
MONOCYTES_23
28.4
MONOCYTES_24
28.3
MONOCYTES_25
28.3
MONOCYTES_26
28.1
MONOCYTES_27
27.9
MONOCYTES_28
27.8
MONOCYTES_29
27.7
MONOCYTES_30
27.4
MONOCYTES_31
27.2
MONOCYTES_32
27.2
MONOCYTES_33
26.7
MONOCYTES_34
26.6
MONOCYTES_35
26.6
MONOCYTES_36
26.6
MONOCYTES_37
26.6
MONOCYTES_38
26.3
MONOCYTES_39
26.2
MONOCYTES_40
26.2
MONOCYTES_41
26.1
MONOCYTES_42
26.1
MONOCYTES_43
26.1
MONOCYTES_44
26.0
MONOCYTES_45
26.0
MONOCYTES_46
26.0
MONOCYTES_47
25.9
MONOCYTES_48
24.7
MONOCYTES_49
24.6
MONOCYTES_50
24.6
MONOCYTES_51
24.6
MONOCYTES_52
24.4
MONOCYTES_53
24.3
MONOCYTES_54
24.3
MONOCYTES_55
24.1
MONOCYTES_56
23.8
MONOCYTES_57
23.7
MONOCYTES_58
23.7
MONOCYTES_59
23.6
MONOCYTES_60
23.6
MONOCYTES_61
23.6
MONOCYTES_62
23.5
MONOCYTES_63
23.5
MONOCYTES_64
23.5
MONOCYTES_65
23.1
MONOCYTES_66
23.0
MONOCYTES_67
23.0
MONOCYTES_68
23.0
MONOCYTES_69
22.9
MONOCYTES_70
22.9
MONOCYTES_71
22.8
MONOCYTES_72
22.6
MONOCYTES_73
22.6
MONOCYTES_74
22.5
MONOCYTES_75
22.5
MONOCYTES_76
22.5
MONOCYTES_77
22.4
MONOCYTES_78
22.4
MONOCYTES_79
21.9
MONOCYTES_80
21.9
MONOCYTES_81
21.6
MONOCYTES_82
21.5
MONOCYTES_83
21.5
MONOCYTES_84
21.4
MONOCYTES_85
21.2
MONOCYTES_86
20.8
MONOCYTES_87
20.8
MONOCYTES_88
20.4
MONOCYTES_89
20.0
MONOCYTES_90
19.0
MONOCYTES_91
18.8
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Non-classical monocyte TPM: 64.6
Samples: 90
Max TPM: 86.3
Min TPM: 48.8
M2_1
86.3
M2_2
85.7
M2_3
83.7
M2_4
83.1
M2_5
82.1
M2_6
81.8
M2_7
79.5
M2_8
79.2
M2_9
78.6
M2_10
75.0
M2_11
75.0
M2_12
74.7
M2_13
73.6
M2_14
73.1
M2_15
73.0
M2_16
72.6
M2_17
72.5
M2_18
72.5
M2_19
72.1
M2_20
72.0
M2_21
71.1
M2_22
69.5
M2_23
69.3
M2_24
68.7
M2_25
68.6
M2_26
67.8
M2_27
67.7
M2_28
67.6
M2_29
67.4
M2_30
67.4
M2_31
67.3
M2_32
67.2
M2_33
65.9
M2_34
65.7
M2_35
65.5
M2_36
65.4
M2_37
65.4
M2_38
65.3
M2_39
65.2
M2_40
65.1
M2_41
65.1
M2_42
64.1
M2_43
63.9
M2_44
63.7
M2_45
63.3
M2_46
63.2
M2_47
62.8
M2_48
62.5
M2_49
62.5
M2_50
62.3
M2_51
62.1
M2_52
61.8
M2_53
61.7
M2_54
61.5
M2_55
60.4
M2_56
60.4
M2_57
59.8
M2_58
59.7
M2_59
59.5
M2_60
59.5
M2_61
59.5
M2_62
59.3
M2_63
59.2
M2_64
58.9
M2_65
58.7
M2_66
58.7
M2_67
58.6
M2_68
58.4
M2_69
58.0
M2_70
57.9
M2_71
57.9
M2_72
57.8
M2_73
57.3
M2_74
57.2
M2_75
57.0
M2_76
57.0
M2_77
57.0
M2_78
56.5
M2_79
54.8
M2_80
54.8
M2_81
54.2
M2_82
53.8
M2_83
53.7
M2_84
53.5
M2_85
53.5
M2_86
53.4
M2_87
53.0
M2_88
52.9
M2_89
50.5
M2_90
48.8
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