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BETA
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  • TPD52
EVOLUTIONARY MEDULLA OBLONGATA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:51.3 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Macaque:79.3 nTPM
Mouse:52.0 nTPM
Rat:137.5 nTPM
Pig:107.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.3
Sample id Sample description nTPM
Area postrema
nTPM: 28.1
2054 Male, age 76, both hemispheres 33.4
2306 Male, age 80, both hemispheres 31.1
2799 Male, age 61, both hemispheres 19.8
Dorsal medullary reticular nucleus
nTPM: 50.6
2040 Female, age 85, both hemispheres 69.1
2373 Male, age 61, both hemispheres 46.4
2088 Male, age 76, both hemispheres 36.2
Dorsal motor vagal complex
nTPM: 37.6
2133 Female, age 91, both hemispheres 50.1
2000 Male, age 74, unknown 46.2
2813 Female, age 72, unknown 40.9
2643 Male, age 74, both hemispheres 35.2
2797 Male, age 61, both hemispheres 32.7
2185 Male, age 76, both hemispheres 32.1
2844 Male, age 55, unknown 32.1
2807 Female, age 85, both hemispheres 31.3
Gigantocellular reticular nuclei, medullary
nTPM: 48.4
1876 Female, age 85, both hemispheres 59.5
2387 Female, age 91, both hemispheres 56.7
2314 Male, age 61, both hemispheres 48.9
2462 Male, age 74, both hemispheres 44.5
2022 Male, age 76, right hemisphere 40.4
2310 Male, age 80, both hemispheres 40.4
Gigantocellular reticular nuclei, pars
nTPM: 42.7
2336 Male, age 61, both hemispheres 51.8
2168 Male, age 76, both hemispheres 44.8
2084 Female, age 85, both hemispheres 42.6
2330 Male, age 80, both hemispheres 37.6
2706 Male, age 80, both hemispheres 36.6
Inferior olive
nTPM: 43.9
2085 Female, age 85, both hemispheres 49.2
2563 Male, age 74, both hemispheres 48.6
2178 Male, age 61, both hemispheres 43.3
2628 Female, age 91, both hemispheres 40.3
2379 Male, age 80, both hemispheres 38.0
Lateral medullary reticular nucleus
nTPM: 49.1
2305 Male, age 74, both hemispheres 67.5
2044 Male, age 76, both hemispheres 51.5
2190 Female, age 85, both hemispheres 48.7
2374 Male, age 61, both hemispheres 46.7
2804 Female, age 91, both hemispheres 44.9
2852 Male, age 80, both hemispheres 35.5
Medial olivary nucleus
nTPM: 41.9
1962 Male, age 76, both hemispheres 45.4
2138 Female, age 91, both hemispheres 43.3
1943 Male, age 61, both hemispheres 41.4
2851 Male, age 80, both hemispheres 37.6
Medial vestibular nucleus
nTPM: 46.9
2803 Female, age 91, both hemispheres 64.5
2801 Male, age 74, both hemispheres 60.8
2093 Male, age 80, both hemispheres 40.8
2134 Male, age 76, both hemispheres 39.4
2743 Female, age 85, both hemispheres 38.1
2624 Male, age 61, both hemispheres 37.7
Motor hypoglossal nucleus
nTPM: 44.9
2125 Female, age 91, both hemispheres 59.2
2132 Female, age 85, both hemispheres 52.3
2461 Male, age 61, both hemispheres 42.1
2182 Male, age 80, both hemispheres 38.0
2277 Male, age 76, both hemispheres 32.8
Nucleus ambiguus
nTPM: 34.3
2071 Male, age 76, both hemispheres 42.1
2096 Female, age 85, both hemispheres 26.5
Nucleus cuneatus
nTPM: 37.7
2381 Male, age 80, both hemispheres 43.5
2376 Male, age 61, both hemispheres 42.7
2380 Male, age 80, both hemispheres 41.8
2808 Female, age 85, both hemispheres 40.5
2805 Female, age 91, both hemispheres 38.0
2562 Male, age 61, both hemispheres 37.2
2564 Male, age 74, both hemispheres 37.2
2131 Male, age 76, both hemispheres 30.4
2100 Male, age 76, both hemispheres 27.9
Nucleus gracilis
nTPM: 41.7
2627 Male, age 74, both hemispheres 54.5
2382 Male, age 80, both hemispheres 42.4
2299 Female, age 85, both hemispheres 28.0
Nucleus raphe obscurus
nTPM: 49.9
2845 Female, age 85, midline 62.9
2800 Male, age 61, midline 49.5
2142 Male, age 76, midline 37.4
Nucleus raphe pallidus
nTPM: 47.0
2183 Male, age 80, midline 53.7
2145 Male, age 76, midline 44.9
1924 Male, age 61, midline 42.4
Nucleus tractus solitarii
nTPM: 34.5
2144 Female, age 91, right hemisphere 51.6
2656 Male, age 76, both hemispheres 35.9
2307 Male, age 80, both hemispheres 25.7
2191 Female, age 85, both hemispheres 24.7
Parvicellular reticular nuclei
nTPM: 46.8
2558 Male, age 74, both hemispheres 53.5
2095 Male, age 76, both hemispheres 45.0
2119 Male, age 80, both hemispheres 41.9
Parvicellular reticular nuclei, medullary
nTPM: 44.8
2189 Female, age 91, both hemispheres 55.1
2181 Male, age 80, left hemisphere 40.6
2091 Female, age 85, both hemispheres 38.8
Peritrigeminal nucleus
nTPM: 40.0
2179 Male, age 61, both hemispheres 47.0
2136 Male, age 76, both hemispheres 41.1
2067 Female, age 85, both hemispheres 31.9
Prepositus hypoglossal nucleus
nTPM: 40.7
2855 Female, age 85, right hemisphere 52.0
2086 Male, age 80, both hemispheres 29.5
Spinal trigeminal nucleus, caudal
nTPM: 45.1
2390 Female, age 91, both hemispheres 54.3
2642 Male, age 74, both hemispheres 46.9
2312 Male, age 61, both hemispheres 46.7
2447 Male, age 76, both hemispheres 38.8
2308 Male, age 80, both hemispheres 38.7
Spinal trigeminal nucleus, interpolar
nTPM: 49.2
2389 Female, age 91, both hemispheres 54.2
2066 Male, age 76, right hemisphere 54.0
2386 Female, age 85, both hemispheres 51.1
2033 Male, age 80, both hemispheres 49.2
2625 Male, age 61, both hemispheres 37.7
Spinal vestibular nucleus
nTPM: 51.3
2384 Male, age 74, both hemispheres 69.3
2186 Female, age 91, both hemispheres 55.9
2806 Female, age 85, both hemispheres 55.3
2796 Male, age 61, both hemispheres 44.5
2748 Male, age 76, both hemispheres 42.7
2780 Male, age 80, both hemispheres 40.2
Superior vestibular nucleus
nTPM: 36.2
2015 Male, age 80, both hemispheres 40.2
2383 Male, age 74, both hemispheres 40.2
2061 Male, age 76, both hemispheres 28.1
Ventral medullary reticular nucleus
nTPM: 43.7
2372 Male, age 61, both hemispheres 48.2
2060 Male, age 76, both hemispheres 39.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 46.7
2180 Male, age 61, both hemispheres 53.9
2741 Female, age 85, both hemispheres 50.7
2302 Female, age 91, both hemispheres 44.7
1986 Male, age 76, both hemispheres 43.5
2118 Male, age 80, both hemispheres 40.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 69.1
FF:10174-103C3 60 years, female 77.5
FF:10038-101F2 18-64 years, mixed 67.4
FF:10155-103A2 76 years, female 62.3

MEDULLA OBLONGATA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.3
Macaque sample Sample description nTPM
Medulla oblongata
nTPM: 79.3
Samples: 1

Max nTPM: 79.3
Min nTPM: 79.3
Sample A 79.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 107.3
Samples: 4

Max nTPM: 121.4
Min nTPM: 83.6
Sample A Female 120.8
Sample B Female 83.6
Sample C Male 103.3
Sample D Male 121.4

MEDULLA OBLONGATA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.0
Mouse sample Sample description nTPM
Medulla oblongata
nTPM: 52.0
Samples: 4

Max nTPM: 55.2
Min nTPM: 50.1
Sample A 50.1
Sample B 55.2
Sample C 50.2
Sample D 52.6

MEDULLA OBLONGATA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.5
Rat sample Sample description nTPM
Medulla oblongata
nTPM: 137.5
Samples: 4

Max nTPM: 153.8
Min nTPM: 128.2
Sample A 132.1
Sample A 135.8
Sample A 153.8
Sample A 128.2

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