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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:173.2 nTPM
GTEx:173.2 nTPM
FANTOM5:77.8 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 173.2
Samples: 105

Max nTPM: 306.9
Min nTPM: 64.9
Std nTPM: 54.6
Median nTPM:
142_1 61 years, female 306.9
162_1 79 years, female 301.7
491_1 89 years, female 292.7
415_1 77 years, female 291.1
32_1 67 years, male 288.1
2_1 77 years, female 271.5
149_1 88 years, male 267.0
266_1 85 years, male 266.6
109_1 81 years, female 261.7
6_1 73 years, female 257.8
117_1 61 years, male 252.3
17_1 71 years, male 251.9
43_1 64 years, female 244.3
81_1 67 years, male 242.3
126_1 63 years, male 241.7
18_1 88 years, male 238.0
120_1 70 years, female 237.7
139_1 64 years, female 235.0
89_1 63 years, male 226.1
115_1 83 years, male 224.9
490_1 67 years, female 224.7
315_1 62 years, female 224.6
153_1 70 years, female 219.9
9_1 66 years, female 219.3
495_1 57 years, female 217.0
468_1 89 years, male 213.2
35_1 74 years, female 208.0
466_1 57 years, female 206.7
217_1 76 years, male 206.0
324_1 76 years, male 204.4
119_1 70 years, female 203.6
322_1 76 years, male 202.6
4_1 88 years, female 201.6
99_1 64 years, male 195.3
137_1 83 years, male 194.1
348_1 84 years, male 187.2
447_1 81 years, male 184.3
265_1 87 years, male 181.9
499_1 55 years, female 180.6
307_1 66 years, female 179.6
335_1 73 years, female 178.5
503_1 68 years, male 178.5
311_1 78 years, male 178.2
526_1 61 years, male 176.8
145_1 84 years, male 173.0
313_1 79 years, female 172.8
288_1 66 years, female 170.6
254_1 77 years, female 170.2
42_1 85 years, male 169.6
518_1 75 years, female 169.1
229_1 69 years, female 166.8
251_1 78 years, male 166.4
286_1 68 years, female 163.4
414_1 84 years, female 163.3
314_1 67 years, male 163.1
352_1 62 years, male 160.3
308_1 70 years, female 158.3
246_1 77 years, male 156.1
501_1 88 years, male 154.9
413_1 59 years, female 152.9
292_1 71 years, male 152.5
517_1 88 years, male 151.3
480_1 63 years, male 150.6
350_1 84 years, female 148.2
316_1 62 years, male 145.4
386_1 76 years, male 144.5
377_1 82 years, female 143.5
293_1 68 years, female 142.8
243_1 75 years, male 141.9
425_1 59 years, female 140.5
317_1 60 years, male 140.2
351_1 91 years, male 138.3
389_1 86 years, female 137.9
396_1 62 years, male 136.9
355_1 70 years, female 135.6
405_1 91 years, male 135.4
320_1 89 years, female 134.5
291_1 76 years, male 133.5
41_1 94 years, female 132.7
404_1 82 years, female 132.3
319_1 81 years, male 128.2
375_1 74 years, female 128.1
173_1 67 years, male 128.0
356_1 87 years, female 127.0
354_1 81 years, female 126.4
349_1 83 years, male 126.1
295_1 61 years, female 125.5
318_1 68 years, male 124.9
347_1 72 years, male 123.5
406_1 79 years, male 122.7
189_1 76 years, male 119.0
264_1 73 years, female 118.3
506_1 65 years, male 114.6
321_1 62 years, female 114.0
353_1 82 years, female 112.5
172_1 72 years, female 110.6
376_1 75 years, female 108.4
237_1 82 years, male 106.8
379_1 60 years, male 102.6
394_1 75 years, female 102.4
384_1 83 years, male 91.0
452_1 88 years, female 90.7
177_1 74 years, male 84.5
163_1 78 years, male 67.3
218_1 71 years, female 64.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

77.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 77.8
FF:10030-101E3 24-65 years, mixed 77.8

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