A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.7
nTPM
Monaco:
96.5
nTPM
Schmiedel:
201.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.7
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.8
P10809_1003
2.2
P10809_1020
0.8
P10809_1039
1.0
P10809_1058
1.5
P10809_1080
1.4
P10809_1107
1.7
Intermediate monocyte nTPM: 6.4
Samples: 6
Max nTPM: 9.4
Min nTPM: 4.7
P10809_1004
9.4
P10809_1023
6.6
P10809_1042
5.4
P10809_1061
7.2
P10809_1081
4.7
P10809_1108
5.1
Non-classical monocyte nTPM: 14.6
Samples: 5
Max nTPM: 27.5
Min nTPM: 8.2
P10809_1005
17.9
P10809_1053
9.8
P10809_1072
27.5
P10809_1082
9.8
P10809_1109
8.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.5
Monaco sample
nTPM
Classical monocyte nTPM: 18.1
Samples: 4
Max nTPM: 21.2
Min nTPM: 11.2
RHH5313_R3680
21.2
RHH5221_R3593
20.6
RHH5250_R3622
19.2
RHH5279_R3651
11.2
Intermediate monocyte nTPM: 70.9
Samples: 4
Max nTPM: 100.0
Min nTPM: 49.9
RHH5314_R3681
49.9
RHH5222_R3594
66.8
RHH5251_R3623
100.0
RHH5280_R3652
66.8
Non-classical monocyte nTPM: 96.5
Samples: 4
Max nTPM: 109.0
Min nTPM: 89.0
RHH5315_R3682
89.0
RHH5223_R3595
109.0
RHH5252_R3624
97.4
RHH5281_R3653
90.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
201.5
Schmiedel sample id
TPM
Classical monocyte TPM: 22.3
Samples: 91
Max TPM: 35.0
Min TPM: 10.2
MONOCYTES_1
35.0
MONOCYTES_2
33.1
MONOCYTES_3
31.8
MONOCYTES_4
31.7
MONOCYTES_5
30.1
MONOCYTES_6
29.1
MONOCYTES_7
28.8
MONOCYTES_8
28.8
MONOCYTES_9
28.8
MONOCYTES_10
28.7
MONOCYTES_11
28.6
MONOCYTES_12
28.5
MONOCYTES_13
27.7
MONOCYTES_14
27.7
MONOCYTES_15
27.4
MONOCYTES_16
27.3
MONOCYTES_17
27.2
MONOCYTES_18
26.9
MONOCYTES_19
26.7
MONOCYTES_20
26.5
MONOCYTES_21
26.4
MONOCYTES_22
26.3
MONOCYTES_23
26.1
MONOCYTES_24
26.0
MONOCYTES_25
25.9
MONOCYTES_26
25.8
MONOCYTES_27
25.8
MONOCYTES_28
25.3
MONOCYTES_29
25.3
MONOCYTES_30
25.3
MONOCYTES_31
24.5
MONOCYTES_32
24.5
MONOCYTES_33
24.3
MONOCYTES_34
24.1
MONOCYTES_35
24.0
MONOCYTES_36
24.0
MONOCYTES_37
24.0
MONOCYTES_38
23.8
MONOCYTES_39
23.8
MONOCYTES_40
23.6
MONOCYTES_41
23.6
MONOCYTES_42
23.4
MONOCYTES_43
23.2
MONOCYTES_44
22.6
MONOCYTES_45
22.6
MONOCYTES_46
22.1
MONOCYTES_47
22.0
MONOCYTES_48
22.0
MONOCYTES_49
22.0
MONOCYTES_50
22.0
MONOCYTES_51
21.7
MONOCYTES_52
21.5
MONOCYTES_53
21.5
MONOCYTES_54
21.3
MONOCYTES_55
21.1
MONOCYTES_56
20.8
MONOCYTES_57
20.8
MONOCYTES_58
20.3
MONOCYTES_59
20.2
MONOCYTES_60
20.2
MONOCYTES_61
20.1
MONOCYTES_62
20.0
MONOCYTES_63
20.0
MONOCYTES_64
20.0
MONOCYTES_65
19.9
MONOCYTES_66
19.5
MONOCYTES_67
19.4
MONOCYTES_68
19.2
MONOCYTES_69
19.2
MONOCYTES_70
19.1
MONOCYTES_71
19.1
MONOCYTES_72
18.6
MONOCYTES_73
18.3
MONOCYTES_74
17.9
MONOCYTES_75
17.9
MONOCYTES_76
17.2
MONOCYTES_77
17.1
MONOCYTES_78
16.8
MONOCYTES_79
16.4
MONOCYTES_80
15.9
MONOCYTES_81
15.9
MONOCYTES_82
15.7
MONOCYTES_83
15.2
MONOCYTES_84
14.2
MONOCYTES_85
12.9
MONOCYTES_86
12.8
MONOCYTES_87
11.8
MONOCYTES_88
11.8
MONOCYTES_89
11.6
MONOCYTES_90
10.8
MONOCYTES_91
10.2
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Non-classical monocyte TPM: 201.5
Samples: 90
Max TPM: 287.7
Min TPM: 140.6
M2_1
287.7
M2_2
272.4
M2_3
262.9
M2_4
261.7
M2_5
256.1
M2_6
247.6
M2_7
244.9
M2_8
244.8
M2_9
244.4
M2_10
241.7
M2_11
241.2
M2_12
239.5
M2_13
238.7
M2_14
237.8
M2_15
235.0
M2_16
234.1
M2_17
234.1
M2_18
232.0
M2_19
229.7
M2_20
229.2
M2_21
228.1
M2_22
225.5
M2_23
225.5
M2_24
224.8
M2_25
224.2
M2_26
222.3
M2_27
221.0
M2_28
218.2
M2_29
217.1
M2_30
216.9
M2_31
214.4
M2_32
213.4
M2_33
211.3
M2_34
210.5
M2_35
210.4
M2_36
208.1
M2_37
207.7
M2_38
207.7
M2_39
205.4
M2_40
205.0
M2_41
204.0
M2_42
203.6
M2_43
203.0
M2_44
199.7
M2_45
196.5
M2_46
196.2
M2_47
195.4
M2_48
194.6
M2_49
194.0
M2_50
190.8
M2_51
190.2
M2_52
189.3
M2_53
188.6
M2_54
187.9
M2_55
186.8
M2_56
186.2
M2_57
186.2
M2_58
185.5
M2_59
184.8
M2_60
184.7
M2_61
184.2
M2_62
184.0
M2_63
183.2
M2_64
181.6
M2_65
180.7
M2_66
180.5
M2_67
180.1
M2_68
180.0
M2_69
180.0
M2_70
178.7
M2_71
176.5
M2_72
176.1
M2_73
172.9
M2_74
170.9
M2_75
168.3
M2_76
168.3
M2_77
168.3
M2_78
167.2
M2_79
165.8
M2_80
163.6
M2_81
163.6
M2_82
161.2
M2_83
160.2
M2_84
158.2
M2_85
156.8
M2_86
156.3
M2_87
151.6
M2_88
149.9
M2_89
143.8
M2_90
140.6
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