A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.6
nTPM
Monaco:
12.4
nTPM
Schmiedel:
12.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.6
HPA sample
nTPM
Classical monocyte nTPM: 6.4
Samples: 6
Max nTPM: 9.4
Min nTPM: 3.1
P10809_1003
6.5
P10809_1020
8.9
P10809_1039
9.4
P10809_1058
4.9
P10809_1080
5.4
P10809_1107
3.1
Intermediate monocyte nTPM: 6.6
Samples: 6
Max nTPM: 12.6
Min nTPM: 3.7
P10809_1004
7.1
P10809_1023
4.8
P10809_1042
6.7
P10809_1061
12.6
P10809_1081
4.8
P10809_1108
3.7
Non-classical monocyte nTPM: 3.7
Samples: 5
Max nTPM: 7.2
Min nTPM: 0.0
P10809_1005
4.5
P10809_1053
7.2
P10809_1072
0.0
P10809_1082
2.7
P10809_1109
3.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
Monaco sample
nTPM
Classical monocyte nTPM: 12.4
Samples: 4
Max nTPM: 13.8
Min nTPM: 11.4
RHH5313_R3680
11.4
RHH5221_R3593
11.6
RHH5250_R3622
12.7
RHH5279_R3651
13.8
Intermediate monocyte nTPM: 12.3
Samples: 4
Max nTPM: 17.1
Min nTPM: 9.0
RHH5314_R3681
9.2
RHH5222_R3594
17.1
RHH5251_R3623
9.0
RHH5280_R3652
13.9
Non-classical monocyte nTPM: 12.4
Samples: 4
Max nTPM: 14.2
Min nTPM: 8.7
RHH5315_R3682
14.2
RHH5223_R3595
14.1
RHH5252_R3624
8.7
RHH5281_R3653
12.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.8
Schmiedel sample id
TPM
Classical monocyte TPM: 7.9
Samples: 91
Max TPM: 11.9
Min TPM: 4.4
MONOCYTES_1
11.9
MONOCYTES_2
11.2
MONOCYTES_3
11.2
MONOCYTES_4
10.9
MONOCYTES_5
10.8
MONOCYTES_6
10.7
MONOCYTES_7
10.5
MONOCYTES_8
10.4
MONOCYTES_9
10.4
MONOCYTES_10
10.2
MONOCYTES_11
10.0
MONOCYTES_12
9.8
MONOCYTES_13
9.7
MONOCYTES_14
9.6
MONOCYTES_15
9.5
MONOCYTES_16
9.4
MONOCYTES_17
9.4
MONOCYTES_18
9.4
MONOCYTES_19
9.3
MONOCYTES_20
9.3
MONOCYTES_21
9.3
MONOCYTES_22
9.3
MONOCYTES_23
8.9
MONOCYTES_24
8.9
MONOCYTES_25
8.9
MONOCYTES_26
8.8
MONOCYTES_27
8.7
MONOCYTES_28
8.7
MONOCYTES_29
8.7
MONOCYTES_30
8.6
MONOCYTES_31
8.5
MONOCYTES_32
8.4
MONOCYTES_33
8.4
MONOCYTES_34
8.4
MONOCYTES_35
8.4
MONOCYTES_36
8.4
MONOCYTES_37
8.3
MONOCYTES_38
8.3
MONOCYTES_39
8.3
MONOCYTES_40
8.3
MONOCYTES_41
8.2
MONOCYTES_42
8.2
MONOCYTES_43
8.1
MONOCYTES_44
8.1
MONOCYTES_45
8.0
MONOCYTES_46
7.9
MONOCYTES_47
7.9
MONOCYTES_48
7.8
MONOCYTES_49
7.8
MONOCYTES_50
7.8
MONOCYTES_51
7.8
MONOCYTES_52
7.8
MONOCYTES_53
7.8
MONOCYTES_54
7.7
MONOCYTES_55
7.7
MONOCYTES_56
7.6
MONOCYTES_57
7.6
MONOCYTES_58
7.6
MONOCYTES_59
7.5
MONOCYTES_60
7.3
MONOCYTES_61
7.3
MONOCYTES_62
7.3
MONOCYTES_63
7.3
MONOCYTES_64
7.3
MONOCYTES_65
7.1
MONOCYTES_66
7.0
MONOCYTES_67
7.0
MONOCYTES_68
6.9
MONOCYTES_69
6.8
MONOCYTES_70
6.7
MONOCYTES_71
6.7
MONOCYTES_72
6.6
MONOCYTES_73
6.6
MONOCYTES_74
6.4
MONOCYTES_75
6.4
MONOCYTES_76
6.3
MONOCYTES_77
6.1
MONOCYTES_78
6.0
MONOCYTES_79
5.8
MONOCYTES_80
5.7
MONOCYTES_81
5.7
MONOCYTES_82
5.5
MONOCYTES_83
5.3
MONOCYTES_84
5.3
MONOCYTES_85
5.3
MONOCYTES_86
5.3
MONOCYTES_87
5.3
MONOCYTES_88
5.0
MONOCYTES_89
4.7
MONOCYTES_90
4.6
MONOCYTES_91
4.4
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Non-classical monocyte TPM: 12.8
Samples: 90
Max TPM: 16.6
Min TPM: 10.0
M2_1
16.6
M2_2
16.2
M2_3
16.1
M2_4
15.5
M2_5
15.4
M2_6
15.4
M2_7
14.9
M2_8
14.9
M2_9
14.8
M2_10
14.6
M2_11
14.6
M2_12
14.6
M2_13
14.4
M2_14
14.3
M2_15
14.3
M2_16
14.2
M2_17
14.2
M2_18
14.1
M2_19
14.1
M2_20
13.8
M2_21
13.8
M2_22
13.7
M2_23
13.7
M2_24
13.6
M2_25
13.5
M2_26
13.5
M2_27
13.5
M2_28
13.5
M2_29
13.4
M2_30
13.4
M2_31
13.4
M2_32
13.3
M2_33
13.2
M2_34
13.2
M2_35
13.2
M2_36
13.2
M2_37
13.1
M2_38
13.0
M2_39
13.0
M2_40
13.0
M2_41
13.0
M2_42
13.0
M2_43
13.0
M2_44
12.9
M2_45
12.9
M2_46
12.9
M2_47
12.8
M2_48
12.8
M2_49
12.8
M2_50
12.7
M2_51
12.7
M2_52
12.7
M2_53
12.6
M2_54
12.5
M2_55
12.5
M2_56
12.4
M2_57
12.4
M2_58
12.3
M2_59
12.3
M2_60
12.1
M2_61
12.1
M2_62
12.1
M2_63
12.1
M2_64
12.0
M2_65
12.0
M2_66
11.9
M2_67
11.8
M2_68
11.8
M2_69
11.8
M2_70
11.8
M2_71
11.7
M2_72
11.5
M2_73
11.5
M2_74
11.4
M2_75
11.4
M2_76
11.4
M2_77
11.4
M2_78
11.3
M2_79
11.3
M2_80
11.3
M2_81
11.3
M2_82
11.2
M2_83
10.8
M2_84
10.7
M2_85
10.5
M2_86
10.2
M2_87
10.2
M2_88
10.1
M2_89
10.0
M2_90
10.0
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