A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
390.6
nTPM
Monaco:
433.3
nTPM
Schmiedel:
48.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
390.6
HPA sample
nTPM
Classical monocyte nTPM: 365.6
Samples: 6
Max nTPM: 637.5
Min nTPM: 267.4
P10809_1003
637.5
P10809_1020
371.4
P10809_1039
275.4
P10809_1058
296.5
P10809_1080
267.4
P10809_1107
345.6
Intermediate monocyte nTPM: 266.6
Samples: 6
Max nTPM: 363.5
Min nTPM: 130.9
P10809_1004
363.5
P10809_1023
343.8
P10809_1042
233.5
P10809_1061
211.1
P10809_1081
130.9
P10809_1108
316.8
Non-classical monocyte nTPM: 390.6
Samples: 5
Max nTPM: 596.2
Min nTPM: 200.3
P10809_1005
436.5
P10809_1053
309.0
P10809_1072
411.1
P10809_1082
200.3
P10809_1109
596.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
433.3
Monaco sample
nTPM
Classical monocyte nTPM: 370.6
Samples: 4
Max nTPM: 446.7
Min nTPM: 306.7
RHH5313_R3680
446.7
RHH5221_R3593
306.7
RHH5250_R3622
338.1
RHH5279_R3651
390.7
Intermediate monocyte nTPM: 315.1
Samples: 4
Max nTPM: 451.6
Min nTPM: 197.2
RHH5314_R3681
289.4
RHH5222_R3594
197.2
RHH5251_R3623
451.6
RHH5280_R3652
322.1
Non-classical monocyte nTPM: 433.3
Samples: 4
Max nTPM: 521.9
Min nTPM: 270.2
RHH5315_R3682
488.3
RHH5223_R3595
270.2
RHH5252_R3624
452.8
RHH5281_R3653
521.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.9
Schmiedel sample id
TPM
Classical monocyte TPM: 46.1
Samples: 91
Max TPM: 88.3
Min TPM: 23.0
MONOCYTES_1
88.3
MONOCYTES_2
69.2
MONOCYTES_3
69.1
MONOCYTES_4
68.1
MONOCYTES_5
67.2
MONOCYTES_6
66.2
MONOCYTES_7
64.2
MONOCYTES_8
62.0
MONOCYTES_9
61.5
MONOCYTES_10
60.5
MONOCYTES_11
60.3
MONOCYTES_12
60.1
MONOCYTES_13
59.6
MONOCYTES_14
59.1
MONOCYTES_15
58.4
MONOCYTES_16
58.3
MONOCYTES_17
57.3
MONOCYTES_18
57.1
MONOCYTES_19
55.5
MONOCYTES_20
54.6
MONOCYTES_21
54.5
MONOCYTES_22
54.5
MONOCYTES_23
53.8
MONOCYTES_24
53.5
MONOCYTES_25
53.0
MONOCYTES_26
52.9
MONOCYTES_27
52.7
MONOCYTES_28
50.0
MONOCYTES_29
49.8
MONOCYTES_30
49.2
MONOCYTES_31
49.0
MONOCYTES_32
48.8
MONOCYTES_33
48.6
MONOCYTES_34
48.0
MONOCYTES_35
47.9
MONOCYTES_36
47.9
MONOCYTES_37
47.8
MONOCYTES_38
47.8
MONOCYTES_39
47.4
MONOCYTES_40
46.9
MONOCYTES_41
46.8
MONOCYTES_42
46.4
MONOCYTES_43
45.7
MONOCYTES_44
45.0
MONOCYTES_45
44.5
MONOCYTES_46
44.4
MONOCYTES_47
44.4
MONOCYTES_48
44.3
MONOCYTES_49
44.1
MONOCYTES_50
43.8
MONOCYTES_51
43.1
MONOCYTES_52
43.0
MONOCYTES_53
42.9
MONOCYTES_54
42.4
MONOCYTES_55
42.2
MONOCYTES_56
42.1
MONOCYTES_57
41.6
MONOCYTES_58
41.5
MONOCYTES_59
41.4
MONOCYTES_60
40.9
MONOCYTES_61
40.9
MONOCYTES_62
40.8
MONOCYTES_63
40.6
MONOCYTES_64
40.2
MONOCYTES_65
39.9
MONOCYTES_66
39.7
MONOCYTES_67
39.4
MONOCYTES_68
38.8
MONOCYTES_69
38.2
MONOCYTES_70
38.0
MONOCYTES_71
37.9
MONOCYTES_72
37.8
MONOCYTES_73
35.6
MONOCYTES_74
35.2
MONOCYTES_75
35.1
MONOCYTES_76
34.7
MONOCYTES_77
34.6
MONOCYTES_78
33.0
MONOCYTES_79
33.0
MONOCYTES_80
32.8
MONOCYTES_81
32.7
MONOCYTES_82
32.7
MONOCYTES_83
31.6
MONOCYTES_84
31.4
MONOCYTES_85
31.0
MONOCYTES_86
29.2
MONOCYTES_87
27.8
MONOCYTES_88
27.5
MONOCYTES_89
25.5
MONOCYTES_90
24.5
MONOCYTES_91
23.0
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Non-classical monocyte TPM: 48.9
Samples: 90
Max TPM: 97.2
Min TPM: 11.8
M2_1
97.2
M2_2
85.5
M2_3
79.0
M2_4
78.3
M2_5
78.2
M2_6
76.2
M2_7
75.7
M2_8
73.0
M2_9
71.4
M2_10
71.0
M2_11
69.8
M2_12
69.1
M2_13
68.5
M2_14
66.8
M2_15
66.2
M2_16
64.5
M2_17
64.4
M2_18
63.2
M2_19
61.9
M2_20
61.4
M2_21
60.7
M2_22
59.9
M2_23
59.1
M2_24
58.5
M2_25
57.9
M2_26
57.8
M2_27
56.9
M2_28
56.6
M2_29
56.3
M2_30
55.3
M2_31
55.2
M2_32
54.5
M2_33
53.0
M2_34
53.0
M2_35
53.0
M2_36
52.9
M2_37
52.7
M2_38
52.4
M2_39
52.2
M2_40
52.1
M2_41
51.8
M2_42
51.4
M2_43
49.6
M2_44
49.4
M2_45
49.0
M2_46
47.3
M2_47
46.9
M2_48
46.3
M2_49
45.7
M2_50
45.6
M2_51
45.0
M2_52
44.5
M2_53
44.0
M2_54
43.8
M2_55
43.8
M2_56
43.7
M2_57
43.5
M2_58
43.5
M2_59
43.3
M2_60
42.9
M2_61
42.7
M2_62
41.7
M2_63
41.4
M2_64
40.1
M2_65
38.8
M2_66
37.4
M2_67
36.4
M2_68
36.2
M2_69
35.9
M2_70
35.2
M2_71
34.6
M2_72
33.6
M2_73
33.5
M2_74
33.0
M2_75
32.8
M2_76
31.4
M2_77
30.6
M2_78
30.0
M2_79
29.0
M2_80
28.8
M2_81
27.6
M2_82
26.9
M2_83
26.8
M2_84
26.4
M2_85
25.4
M2_86
25.2
M2_87
24.1
M2_88
19.4
M2_89
15.4
M2_90
11.8
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