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TISSUE PRIMARY DATA URINARY BLADDER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Urinary bladder
Tissue proteome
Tissue methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:164.2 nTPM
HPA:95.1 nTPM
GTEx:164.2 nTPM
FANTOM5:243.6 Scaled Tags Per Million
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA008848Antibody CAB002147
Urothelial cells LowNot detected




URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.1
overview
Male, age 74
Urinary bladder sample 264
nTPM: 137.2
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 37.8
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 0.1
Urinary bladder sample 1597
nTPM: 87.5
N/A
Female, age 0.1
Urinary bladder sample 1598
nTPM: 118

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.2
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 164.2
Samples: 77

Max nTPM: 369.0
Min nTPM: 22.1
Std nTPM: 82.9
Median nTPM: 165.0
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 369.0
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 362.4
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 327.5
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 321.3
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 294.2
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 287.2
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 282.6
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 279.6
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 276.8
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 273.8
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 251.6
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 250.3
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 245.1
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 238.6
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 238.2
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 235.6
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 225.8
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 223.5
GTEX-Q734-1226-SM-GRR21 40-49 years, female 223.1
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 222.0
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 219.3
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 219.0
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 214.7
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 212.6
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 212.5
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 201.9
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 198.5
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 195.1
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 194.6
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 192.4
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 188.3
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 186.5
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 181.0
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 173.7
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 173.0
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 172.7
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 170.6
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 167.5
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 165.0
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 159.4
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 152.6
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 144.3
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 143.9
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 141.1
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 137.0
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 135.2
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 133.0
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 132.7
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 125.8
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 121.2
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 120.4
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 120.0
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 118.0
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 114.5
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 112.1
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 110.9
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 110.1
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 98.1
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 93.5
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 87.0
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 84.6
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 80.8
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 75.9
GTEX-R45C-2426-SM-HL11G 60-69 years, female 70.8
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 69.8
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 68.0
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 64.0
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 63.4
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 54.4
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 53.1
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 51.9
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 50.8
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 49.6
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 38.9
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 38.1
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 30.9
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 22.1
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

243.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 243.6
FF:10011-101C2 55,58,79 years, mixed 243.6

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