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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
143.6
Sample id
Sample description
nTPM
Amygdala nTPM: 74.9
1987
Female, age 91, left hemisphere
127.6
2517
Female, age 94, left hemisphere
81.7
2814
Male, age 76, right hemisphere
69.3
2514
Male, age 75, right hemisphere
65.2
2695
Female, age 67, right hemisphere
30.8
Basal amygdala nTPM: 129.1
2243
Female, age 91, right hemisphere
205.1
2685
Female, age 94, left hemisphere
150.5
2827
Female, age 67, right hemisphere
135.5
2110
Male, age 80, left hemisphere
119.7
1955
Male, age 76, both hemispheres
93.7
2609
Male, age 75, right hemisphere
69.9
Central amygdala nTPM: 107.4
2701
Female, age 91, right hemisphere
168.6
2239
Male, age 80, left hemisphere
140.3
2826
Female, age 94, left hemisphere
94.4
1905
Male, age 76, both hemispheres
67.3
2515
Male, age 75, right hemisphere
66.4
Corticomedial amygdala nTPM: 143.6
2535
Female, age 67, right hemisphere
226.4
2242
Female, age 91, right hemisphere
185.8
2429
Female, age 94, left hemisphere
152.9
2829
Male, age 80, left hemisphere
144.5
2240
Male, age 76, both hemispheres
88.0
2428
Male, age 75, right hemisphere
64.2
Lateral amygdala nTPM: 107.1
2255
Female, age 91, right hemisphere
186.9
2534
Female, age 94, left hemisphere
123.8
2256
Male, age 80, left hemisphere
115.6
1883
Male, age 76, both hemispheres
92.6
2830
Female, age 67, right hemisphere
78.9
2516
Male, age 75, right hemisphere
44.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 59.0
Samples: 181
Max nTPM: 240.0
Min nTPM: 15.5
Std nTPM: 24.8
Median nTPM: 55.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
240.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
128.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
123.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
113.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
108.9
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
108.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
106.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
105.8
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
105.0
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
104.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
95.0
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
93.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
93.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
90.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
86.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
86.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
86.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
86.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
86.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
85.8
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
84.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
83.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
82.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
81.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
80.2
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
79.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
79.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
78.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
78.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
77.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
77.4
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
75.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
75.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
74.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
73.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
73.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
73.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
72.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
72.8
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
72.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
71.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
71.8
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
71.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
71.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
71.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
70.6
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
70.3
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
70.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
70.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
69.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
69.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
68.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
68.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
68.7
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
68.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
67.0
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
66.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
66.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
65.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
65.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
65.4
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
65.2
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
65.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
64.7
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
63.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
63.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
63.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
61.8
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
61.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
61.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
61.0
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
60.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
60.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
59.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
59.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
59.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
59.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
58.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
58.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
58.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
58.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
58.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
58.5
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
58.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
57.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
57.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
57.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
57.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
56.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
55.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
55.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
55.3
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
55.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
55.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
54.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
54.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
54.1
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
54.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
53.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
53.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
53.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
53.0
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
52.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
52.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
51.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
51.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
50.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
49.3
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
49.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
49.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
49.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
48.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
48.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
48.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
48.1
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
47.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
47.8
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
47.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
47.5
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
47.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
47.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
46.7
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
46.1
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
46.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
45.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
45.8
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
45.7
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
45.7
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
45.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
45.3
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
45.3
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
44.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
44.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
43.8
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
43.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
43.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
43.2
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
43.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
43.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
42.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
42.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
42.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
41.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
41.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
40.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
40.7
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
40.6
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
40.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
40.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
40.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
40.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
39.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
39.3
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
39.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
39.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
37.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
35.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
35.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
34.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
34.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
34.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
33.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
33.9
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
33.8
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
33.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
33.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
32.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
32.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
31.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
31.8
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
28.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
27.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
25.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
25.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
25.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
24.9
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
24.9
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
21.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
20.2
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
18.7
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
15.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.0
Pig sample
Sample description
nTPM
Amygdala nTPM: 58.0
Samples: 4
Max nTPM: 70.7
Min nTPM: 48.4
Sample A
Female
70.7
Sample B
Female
58.4
Sample C
Male
54.4
Sample D
Male
48.4
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
116.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 116.9
Samples: 4
Max nTPM: 134.7
Min nTPM: 108.6
Sample A
Male
109.2
Sample B
Male
108.6
Sample C
Female
134.7
Sample D
Female
114.9
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
