A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.0
nTPM
Monaco:
26.3
nTPM
Schmiedel:
31.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.0
HPA sample
nTPM
Classical monocyte nTPM: 10.1
Samples: 6
Max nTPM: 17.9
Min nTPM: 4.7
P10809_1003
5.9
P10809_1020
4.7
P10809_1039
4.8
P10809_1058
11.4
P10809_1080
15.6
P10809_1107
17.9
Intermediate monocyte nTPM: 10.2
Samples: 6
Max nTPM: 16.3
Min nTPM: 5.0
P10809_1004
7.0
P10809_1023
6.1
P10809_1042
5.0
P10809_1061
16.3
P10809_1081
11.8
P10809_1108
14.9
Non-classical monocyte nTPM: 14.0
Samples: 5
Max nTPM: 30.4
Min nTPM: 5.7
P10809_1005
6.8
P10809_1053
5.7
P10809_1072
30.4
P10809_1082
9.1
P10809_1109
18.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.3
Monaco sample
nTPM
Classical monocyte nTPM: 23.5
Samples: 4
Max nTPM: 25.3
Min nTPM: 19.6
RHH5313_R3680
23.8
RHH5221_R3593
25.3
RHH5250_R3622
25.1
RHH5279_R3651
19.6
Intermediate monocyte nTPM: 21.0
Samples: 4
Max nTPM: 30.7
Min nTPM: 14.3
RHH5314_R3681
14.3
RHH5222_R3594
30.7
RHH5251_R3623
22.1
RHH5280_R3652
17.1
Non-classical monocyte nTPM: 26.3
Samples: 4
Max nTPM: 39.3
Min nTPM: 21.0
RHH5315_R3682
21.6
RHH5223_R3595
39.3
RHH5252_R3624
21.0
RHH5281_R3653
23.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.2
Schmiedel sample id
TPM
Classical monocyte TPM: 31.2
Samples: 91
Max TPM: 61.9
Min TPM: 12.0
MONOCYTES_1
61.9
MONOCYTES_2
55.3
MONOCYTES_3
52.0
MONOCYTES_4
51.4
MONOCYTES_5
48.4
MONOCYTES_6
48.0
MONOCYTES_7
47.5
MONOCYTES_8
47.3
MONOCYTES_9
46.6
MONOCYTES_10
45.9
MONOCYTES_11
44.8
MONOCYTES_12
44.7
MONOCYTES_13
44.2
MONOCYTES_14
44.1
MONOCYTES_15
43.9
MONOCYTES_16
43.5
MONOCYTES_17
43.2
MONOCYTES_18
43.1
MONOCYTES_19
42.5
MONOCYTES_20
42.4
MONOCYTES_21
41.9
MONOCYTES_22
41.5
MONOCYTES_23
41.4
MONOCYTES_24
41.3
MONOCYTES_25
39.8
MONOCYTES_26
38.8
MONOCYTES_27
38.3
MONOCYTES_28
38.3
MONOCYTES_29
38.2
MONOCYTES_30
37.5
MONOCYTES_31
36.2
MONOCYTES_32
35.8
MONOCYTES_33
35.6
MONOCYTES_34
35.6
MONOCYTES_35
35.2
MONOCYTES_36
34.9
MONOCYTES_37
34.2
MONOCYTES_38
34.1
MONOCYTES_39
34.1
MONOCYTES_40
32.7
MONOCYTES_41
32.7
MONOCYTES_42
32.1
MONOCYTES_43
31.5
MONOCYTES_44
30.5
MONOCYTES_45
30.2
MONOCYTES_46
30.0
MONOCYTES_47
29.7
MONOCYTES_48
29.4
MONOCYTES_49
29.1
MONOCYTES_50
29.1
MONOCYTES_51
28.7
MONOCYTES_52
28.4
MONOCYTES_53
28.3
MONOCYTES_54
26.5
MONOCYTES_55
26.5
MONOCYTES_56
26.1
MONOCYTES_57
25.8
MONOCYTES_58
25.7
MONOCYTES_59
25.6
MONOCYTES_60
24.8
MONOCYTES_61
24.5
MONOCYTES_62
24.1
MONOCYTES_63
24.0
MONOCYTES_64
23.9
MONOCYTES_65
23.8
MONOCYTES_66
23.8
MONOCYTES_67
23.5
MONOCYTES_68
22.6
MONOCYTES_69
22.0
MONOCYTES_70
21.7
MONOCYTES_71
21.5
MONOCYTES_72
21.4
MONOCYTES_73
20.3
MONOCYTES_74
20.0
MONOCYTES_75
19.4
MONOCYTES_76
19.0
MONOCYTES_77
18.6
MONOCYTES_78
18.5
MONOCYTES_79
17.9
MONOCYTES_80
17.7
MONOCYTES_81
16.8
MONOCYTES_82
16.3
MONOCYTES_83
14.9
MONOCYTES_84
14.8
MONOCYTES_85
14.3
MONOCYTES_86
14.0
MONOCYTES_87
13.7
MONOCYTES_88
13.2
MONOCYTES_89
12.6
MONOCYTES_90
12.2
MONOCYTES_91
12.0
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Non-classical monocyte TPM: 20.2
Samples: 90
Max TPM: 39.7
Min TPM: 3.5
M2_1
39.7
M2_2
38.3
M2_3
38.3
M2_4
37.2
M2_5
35.3
M2_6
34.8
M2_7
34.5
M2_8
33.8
M2_9
32.1
M2_10
31.8
M2_11
30.3
M2_12
30.1
M2_13
30.0
M2_14
29.9
M2_15
29.6
M2_16
29.5
M2_17
28.3
M2_18
28.2
M2_19
28.0
M2_20
27.6
M2_21
27.2
M2_22
27.0
M2_23
26.8
M2_24
26.6
M2_25
26.6
M2_26
26.2
M2_27
25.4
M2_28
25.4
M2_29
24.6
M2_30
24.5
M2_31
24.4
M2_32
24.1
M2_33
23.9
M2_34
23.7
M2_35
23.1
M2_36
23.1
M2_37
22.7
M2_38
22.7
M2_39
22.7
M2_40
22.5
M2_41
22.3
M2_42
21.9
M2_43
21.7
M2_44
21.2
M2_45
21.2
M2_46
21.0
M2_47
21.0
M2_48
20.9
M2_49
20.4
M2_50
19.7
M2_51
19.7
M2_52
19.5
M2_53
18.3
M2_54
18.1
M2_55
17.1
M2_56
17.1
M2_57
16.9
M2_58
16.8
M2_59
16.5
M2_60
16.4
M2_61
16.4
M2_62
15.0
M2_63
15.0
M2_64
14.6
M2_65
14.0
M2_66
13.2
M2_67
13.2
M2_68
11.7
M2_69
11.6
M2_70
11.5
M2_71
11.5
M2_72
11.1
M2_73
11.0
M2_74
10.6
M2_75
9.9
M2_76
9.3
M2_77
9.2
M2_78
8.3
M2_79
8.1
M2_80
8.0
M2_81
7.8
M2_82
7.5
M2_83
7.3
M2_84
6.8
M2_85
6.7
M2_86
5.9
M2_87
5.0
M2_88
4.6
M2_89
3.5
M2_90
3.5
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