A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
2.4
nTPM
Schmiedel:
26.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Classical monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.5
P10809_1003
0.5
P10809_1020
0.6
P10809_1039
0.5
P10809_1058
1.3
P10809_1080
0.9
P10809_1107
0.9
Intermediate monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.1
P10809_1004
0.5
P10809_1023
0.1
P10809_1042
1.2
P10809_1061
0.6
P10809_1081
0.9
P10809_1108
1.4
Non-classical monocyte nTPM: 0.5
Samples: 5
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1005
0.4
P10809_1053
0.4
P10809_1072
0.0
P10809_1082
0.9
P10809_1109
0.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
Monaco sample
nTPM
Classical monocyte nTPM: 2.3
Samples: 4
Max nTPM: 2.8
Min nTPM: 1.3
RHH5313_R3680
2.2
RHH5221_R3593
2.8
RHH5250_R3622
1.3
RHH5279_R3651
2.8
Intermediate monocyte nTPM: 2.4
Samples: 4
Max nTPM: 4.0
Min nTPM: 1.3
RHH5314_R3681
1.4
RHH5222_R3594
2.9
RHH5251_R3623
4.0
RHH5280_R3652
1.3
Non-classical monocyte nTPM: 2.4
Samples: 4
Max nTPM: 3.2
Min nTPM: 1.9
RHH5315_R3682
2.1
RHH5223_R3595
1.9
RHH5252_R3624
3.2
RHH5281_R3653
2.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.9
Schmiedel sample id
TPM
Classical monocyte TPM: 26.9
Samples: 91
Max TPM: 42.0
Min TPM: 13.6
MONOCYTES_1
42.0
MONOCYTES_2
41.7
MONOCYTES_3
40.1
MONOCYTES_4
39.7
MONOCYTES_5
37.6
MONOCYTES_6
36.7
MONOCYTES_7
35.8
MONOCYTES_8
35.7
MONOCYTES_9
35.6
MONOCYTES_10
35.5
MONOCYTES_11
35.4
MONOCYTES_12
34.9
MONOCYTES_13
34.3
MONOCYTES_14
34.3
MONOCYTES_15
33.3
MONOCYTES_16
33.2
MONOCYTES_17
33.1
MONOCYTES_18
33.1
MONOCYTES_19
32.7
MONOCYTES_20
32.5
MONOCYTES_21
32.5
MONOCYTES_22
32.2
MONOCYTES_23
32.2
MONOCYTES_24
32.1
MONOCYTES_25
32.1
MONOCYTES_26
32.0
MONOCYTES_27
32.0
MONOCYTES_28
31.6
MONOCYTES_29
31.3
MONOCYTES_30
31.2
MONOCYTES_31
31.2
MONOCYTES_32
30.2
MONOCYTES_33
29.9
MONOCYTES_34
29.9
MONOCYTES_35
29.8
MONOCYTES_36
29.7
MONOCYTES_37
29.7
MONOCYTES_38
29.1
MONOCYTES_39
29.0
MONOCYTES_40
28.9
MONOCYTES_41
28.3
MONOCYTES_42
28.2
MONOCYTES_43
28.1
MONOCYTES_44
27.4
MONOCYTES_45
27.0
MONOCYTES_46
26.7
MONOCYTES_47
26.3
MONOCYTES_48
25.8
MONOCYTES_49
25.8
MONOCYTES_50
25.8
MONOCYTES_51
25.5
MONOCYTES_52
25.3
MONOCYTES_53
25.3
MONOCYTES_54
24.8
MONOCYTES_55
24.8
MONOCYTES_56
24.6
MONOCYTES_57
24.6
MONOCYTES_58
24.3
MONOCYTES_59
24.1
MONOCYTES_60
23.5
MONOCYTES_61
23.4
MONOCYTES_62
22.7
MONOCYTES_63
22.3
MONOCYTES_64
21.9
MONOCYTES_65
21.7
MONOCYTES_66
21.6
MONOCYTES_67
21.6
MONOCYTES_68
21.4
MONOCYTES_69
21.2
MONOCYTES_70
21.1
MONOCYTES_71
20.9
MONOCYTES_72
20.9
MONOCYTES_73
20.8
MONOCYTES_74
20.5
MONOCYTES_75
19.8
MONOCYTES_76
19.8
MONOCYTES_77
18.9
MONOCYTES_78
18.9
MONOCYTES_79
18.9
MONOCYTES_80
18.4
MONOCYTES_81
18.2
MONOCYTES_82
17.7
MONOCYTES_83
16.7
MONOCYTES_84
16.6
MONOCYTES_85
16.4
MONOCYTES_86
16.0
MONOCYTES_87
15.9
MONOCYTES_88
15.6
MONOCYTES_89
15.4
MONOCYTES_90
15.3
MONOCYTES_91
13.6
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Non-classical monocyte TPM: 22.4
Samples: 90
Max TPM: 35.9
Min TPM: 6.7
M2_1
35.9
M2_2
35.7
M2_3
34.5
M2_4
33.7
M2_5
32.8
M2_6
32.8
M2_7
32.2
M2_8
31.9
M2_9
31.9
M2_10
31.5
M2_11
31.2
M2_12
30.4
M2_13
30.3
M2_14
29.7
M2_15
29.5
M2_16
29.5
M2_17
29.2
M2_18
29.2
M2_19
28.9
M2_20
27.9
M2_21
27.8
M2_22
27.1
M2_23
27.1
M2_24
27.0
M2_25
26.9
M2_26
26.8
M2_27
26.8
M2_28
26.8
M2_29
26.7
M2_30
26.7
M2_31
26.7
M2_32
26.2
M2_33
26.1
M2_34
25.2
M2_35
25.1
M2_36
25.0
M2_37
25.0
M2_38
24.7
M2_39
24.4
M2_40
23.9
M2_41
23.8
M2_42
23.7
M2_43
23.6
M2_44
23.5
M2_45
23.2
M2_46
22.9
M2_47
22.8
M2_48
22.6
M2_49
22.5
M2_50
22.3
M2_51
22.2
M2_52
22.2
M2_53
22.0
M2_54
21.7
M2_55
21.5
M2_56
21.3
M2_57
20.4
M2_58
20.2
M2_59
19.7
M2_60
19.5
M2_61
19.3
M2_62
19.1
M2_63
19.0
M2_64
18.8
M2_65
17.9
M2_66
17.6
M2_67
17.1
M2_68
16.6
M2_69
16.5
M2_70
16.4
M2_71
15.9
M2_72
15.9
M2_73
14.9
M2_74
14.9
M2_75
14.1
M2_76
14.0
M2_77
13.9
M2_78
13.5
M2_79
12.9
M2_80
11.9
M2_81
11.7
M2_82
11.6
M2_83
11.3
M2_84
11.1
M2_85
10.8
M2_86
10.2
M2_87
10.2
M2_88
8.3
M2_89
7.9
M2_90
6.7
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