A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.3
nTPM
Monaco:
49.4
nTPM
Schmiedel:
47.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.3
HPA sample
nTPM
Classical monocyte nTPM: 28.0
Samples: 6
Max nTPM: 32.3
Min nTPM: 24.5
P10809_1003
25.0
P10809_1020
32.3
P10809_1039
31.3
P10809_1058
24.8
P10809_1080
24.5
P10809_1107
30.4
Intermediate monocyte nTPM: 32.3
Samples: 6
Max nTPM: 47.8
Min nTPM: 21.1
P10809_1004
27.3
P10809_1023
31.6
P10809_1042
34.8
P10809_1061
47.8
P10809_1081
21.1
P10809_1108
30.9
Non-classical monocyte nTPM: 16.2
Samples: 5
Max nTPM: 23.6
Min nTPM: 5.7
P10809_1005
19.1
P10809_1053
19.0
P10809_1072
5.7
P10809_1082
13.8
P10809_1109
23.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.4
Monaco sample
nTPM
Classical monocyte nTPM: 49.5
Samples: 4
Max nTPM: 61.5
Min nTPM: 36.5
RHH5313_R3680
52.1
RHH5221_R3593
47.7
RHH5250_R3622
61.5
RHH5279_R3651
36.5
Intermediate monocyte nTPM: 42.1
Samples: 4
Max nTPM: 53.8
Min nTPM: 29.5
RHH5314_R3681
53.8
RHH5222_R3594
32.8
RHH5251_R3623
29.5
RHH5280_R3652
52.2
Non-classical monocyte nTPM: 34.0
Samples: 4
Max nTPM: 45.2
Min nTPM: 25.1
RHH5315_R3682
45.2
RHH5223_R3595
25.1
RHH5252_R3624
31.4
RHH5281_R3653
34.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.8
Schmiedel sample id
TPM
Classical monocyte TPM: 47.8
Samples: 91
Max TPM: 68.2
Min TPM: 28.7
MONOCYTES_1
68.2
MONOCYTES_2
63.7
MONOCYTES_3
62.3
MONOCYTES_4
62.2
MONOCYTES_5
61.3
MONOCYTES_6
60.1
MONOCYTES_7
59.8
MONOCYTES_8
59.3
MONOCYTES_9
58.8
MONOCYTES_10
57.8
MONOCYTES_11
57.5
MONOCYTES_12
57.0
MONOCYTES_13
56.6
MONOCYTES_14
56.2
MONOCYTES_15
56.2
MONOCYTES_16
56.0
MONOCYTES_17
55.8
MONOCYTES_18
55.8
MONOCYTES_19
55.4
MONOCYTES_20
55.3
MONOCYTES_21
55.1
MONOCYTES_22
54.8
MONOCYTES_23
54.6
MONOCYTES_24
54.3
MONOCYTES_25
54.1
MONOCYTES_26
54.1
MONOCYTES_27
54.1
MONOCYTES_28
53.7
MONOCYTES_29
53.6
MONOCYTES_30
53.4
MONOCYTES_31
52.5
MONOCYTES_32
52.4
MONOCYTES_33
51.7
MONOCYTES_34
51.7
MONOCYTES_35
50.6
MONOCYTES_36
50.4
MONOCYTES_37
50.4
MONOCYTES_38
49.8
MONOCYTES_39
49.7
MONOCYTES_40
49.3
MONOCYTES_41
48.7
MONOCYTES_42
48.7
MONOCYTES_43
48.4
MONOCYTES_44
48.4
MONOCYTES_45
47.9
MONOCYTES_46
47.8
MONOCYTES_47
47.7
MONOCYTES_48
47.4
MONOCYTES_49
47.1
MONOCYTES_50
46.9
MONOCYTES_51
46.8
MONOCYTES_52
46.8
MONOCYTES_53
46.6
MONOCYTES_54
45.4
MONOCYTES_55
45.2
MONOCYTES_56
45.2
MONOCYTES_57
44.9
MONOCYTES_58
44.7
MONOCYTES_59
44.6
MONOCYTES_60
44.3
MONOCYTES_61
43.9
MONOCYTES_62
43.9
MONOCYTES_63
43.8
MONOCYTES_64
43.6
MONOCYTES_65
43.3
MONOCYTES_66
43.2
MONOCYTES_67
42.8
MONOCYTES_68
42.5
MONOCYTES_69
42.4
MONOCYTES_70
42.3
MONOCYTES_71
42.1
MONOCYTES_72
41.4
MONOCYTES_73
40.6
MONOCYTES_74
40.2
MONOCYTES_75
39.1
MONOCYTES_76
39.1
MONOCYTES_77
38.7
MONOCYTES_78
38.7
MONOCYTES_79
38.3
MONOCYTES_80
37.8
MONOCYTES_81
37.6
MONOCYTES_82
35.6
MONOCYTES_83
35.1
MONOCYTES_84
35.0
MONOCYTES_85
34.4
MONOCYTES_86
33.1
MONOCYTES_87
31.9
MONOCYTES_88
31.2
MONOCYTES_89
30.7
MONOCYTES_90
30.5
MONOCYTES_91
28.7
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Non-classical monocyte TPM: 35.4
Samples: 90
Max TPM: 55.8
Min TPM: 11.8
M2_1
55.8
M2_2
52.6
M2_3
52.4
M2_4
48.1
M2_5
47.8
M2_6
47.7
M2_7
47.2
M2_8
46.8
M2_9
44.4
M2_10
43.9
M2_11
43.8
M2_12
43.8
M2_13
43.6
M2_14
43.6
M2_15
43.5
M2_16
43.5
M2_17
43.3
M2_18
43.2
M2_19
42.9
M2_20
42.8
M2_21
42.6
M2_22
42.5
M2_23
42.1
M2_24
41.8
M2_25
41.7
M2_26
41.6
M2_27
41.4
M2_28
41.4
M2_29
40.5
M2_30
40.4
M2_31
39.9
M2_32
38.8
M2_33
38.5
M2_34
38.3
M2_35
38.0
M2_36
37.9
M2_37
37.0
M2_38
37.0
M2_39
37.0
M2_40
36.7
M2_41
36.7
M2_42
36.6
M2_43
36.4
M2_44
36.3
M2_45
36.2
M2_46
35.9
M2_47
35.9
M2_48
35.6
M2_49
35.2
M2_50
35.1
M2_51
35.0
M2_52
34.3
M2_53
34.2
M2_54
34.1
M2_55
33.6
M2_56
33.3
M2_57
33.3
M2_58
33.1
M2_59
33.0
M2_60
32.3
M2_61
32.1
M2_62
31.9
M2_63
31.7
M2_64
31.3
M2_65
31.3
M2_66
31.1
M2_67
30.9
M2_68
30.4
M2_69
30.1
M2_70
30.0
M2_71
29.4
M2_72
29.3
M2_73
29.1
M2_74
27.7
M2_75
27.5
M2_76
25.9
M2_77
25.4
M2_78
25.1
M2_79
25.1
M2_80
24.8
M2_81
24.7
M2_82
24.0
M2_83
23.9
M2_84
21.4
M2_85
20.7
M2_86
18.4
M2_87
18.1
M2_88
17.3
M2_89
13.6
M2_90
11.8
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