A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
75.2
nTPM
Monaco:
34.9
nTPM
Schmiedel:
15.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.2
HPA sample
nTPM
Classical monocyte nTPM: 66.4
Samples: 6
Max nTPM: 97.3
Min nTPM: 44.1
P10809_1003
44.1
P10809_1020
97.3
P10809_1039
84.2
P10809_1058
53.5
P10809_1080
67.2
P10809_1107
52.0
Intermediate monocyte nTPM: 75.2
Samples: 6
Max nTPM: 93.0
Min nTPM: 49.6
P10809_1004
49.6
P10809_1023
90.2
P10809_1042
80.2
P10809_1061
93.0
P10809_1081
58.9
P10809_1108
79.2
Non-classical monocyte nTPM: 47.4
Samples: 5
Max nTPM: 55.5
Min nTPM: 38.2
P10809_1005
48.0
P10809_1053
50.4
P10809_1072
44.7
P10809_1082
38.2
P10809_1109
55.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.9
Monaco sample
nTPM
Classical monocyte nTPM: 25.8
Samples: 4
Max nTPM: 34.2
Min nTPM: 17.7
RHH5313_R3680
29.6
RHH5221_R3593
17.7
RHH5250_R3622
34.2
RHH5279_R3651
21.5
Intermediate monocyte nTPM: 34.9
Samples: 4
Max nTPM: 54.1
Min nTPM: 17.5
RHH5314_R3681
54.1
RHH5222_R3594
24.1
RHH5251_R3623
17.5
RHH5280_R3652
43.8
Non-classical monocyte nTPM: 18.1
Samples: 4
Max nTPM: 24.4
Min nTPM: 11.7
RHH5315_R3682
24.4
RHH5223_R3595
12.8
RHH5252_R3624
11.7
RHH5281_R3653
23.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.4
Schmiedel sample id
TPM
Classical monocyte TPM: 15.4
Samples: 91
Max TPM: 30.0
Min TPM: 3.4
MONOCYTES_1
30.0
MONOCYTES_2
28.0
MONOCYTES_3
27.4
MONOCYTES_4
26.9
MONOCYTES_5
25.1
MONOCYTES_6
25.1
MONOCYTES_7
24.8
MONOCYTES_8
24.4
MONOCYTES_9
24.0
MONOCYTES_10
23.9
MONOCYTES_11
23.5
MONOCYTES_12
23.2
MONOCYTES_13
23.0
MONOCYTES_14
23.0
MONOCYTES_15
22.6
MONOCYTES_16
22.4
MONOCYTES_17
22.0
MONOCYTES_18
21.9
MONOCYTES_19
20.8
MONOCYTES_20
20.8
MONOCYTES_21
20.5
MONOCYTES_22
20.3
MONOCYTES_23
20.3
MONOCYTES_24
20.1
MONOCYTES_25
20.1
MONOCYTES_26
19.8
MONOCYTES_27
19.6
MONOCYTES_28
19.2
MONOCYTES_29
19.0
MONOCYTES_30
18.6
MONOCYTES_31
18.5
MONOCYTES_32
17.5
MONOCYTES_33
17.4
MONOCYTES_34
17.1
MONOCYTES_35
17.0
MONOCYTES_36
17.0
MONOCYTES_37
16.8
MONOCYTES_38
16.5
MONOCYTES_39
16.4
MONOCYTES_40
16.1
MONOCYTES_41
16.1
MONOCYTES_42
15.8
MONOCYTES_43
15.7
MONOCYTES_44
15.7
MONOCYTES_45
15.4
MONOCYTES_46
14.9
MONOCYTES_47
14.9
MONOCYTES_48
14.6
MONOCYTES_49
14.5
MONOCYTES_50
14.4
MONOCYTES_51
14.3
MONOCYTES_52
13.8
MONOCYTES_53
13.7
MONOCYTES_54
13.7
MONOCYTES_55
13.6
MONOCYTES_56
13.5
MONOCYTES_57
12.6
MONOCYTES_58
12.6
MONOCYTES_59
12.4
MONOCYTES_60
12.3
MONOCYTES_61
12.3
MONOCYTES_62
12.0
MONOCYTES_63
12.0
MONOCYTES_64
11.8
MONOCYTES_65
11.8
MONOCYTES_66
11.6
MONOCYTES_67
11.4
MONOCYTES_68
11.3
MONOCYTES_69
10.9
MONOCYTES_70
10.4
MONOCYTES_71
10.2
MONOCYTES_72
9.8
MONOCYTES_73
9.6
MONOCYTES_74
8.9
MONOCYTES_75
8.8
MONOCYTES_76
8.2
MONOCYTES_77
8.1
MONOCYTES_78
8.0
MONOCYTES_79
7.9
MONOCYTES_80
7.8
MONOCYTES_81
7.6
MONOCYTES_82
7.4
MONOCYTES_83
6.9
MONOCYTES_84
6.3
MONOCYTES_85
6.2
MONOCYTES_86
6.0
MONOCYTES_87
5.5
MONOCYTES_88
4.9
MONOCYTES_89
4.9
MONOCYTES_90
4.2
MONOCYTES_91
3.4
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Non-classical monocyte TPM: 9.5
Samples: 90
Max TPM: 27.9
Min TPM: 0.6
M2_1
27.9
M2_2
20.3
M2_3
20.1
M2_4
19.1
M2_5
18.0
M2_6
17.4
M2_7
17.2
M2_8
17.1
M2_9
16.2
M2_10
16.1
M2_11
16.0
M2_12
15.8
M2_13
15.6
M2_14
15.2
M2_15
15.1
M2_16
14.8
M2_17
14.7
M2_18
14.3
M2_19
14.2
M2_20
14.1
M2_21
14.1
M2_22
13.3
M2_23
12.8
M2_24
12.7
M2_25
12.5
M2_26
12.4
M2_27
12.3
M2_28
12.2
M2_29
12.1
M2_30
12.0
M2_31
11.9
M2_32
11.3
M2_33
11.3
M2_34
11.3
M2_35
11.0
M2_36
10.7
M2_37
10.5
M2_38
10.5
M2_39
10.5
M2_40
10.0
M2_41
10.0
M2_42
10.0
M2_43
10.0
M2_44
9.9
M2_45
9.9
M2_46
9.7
M2_47
9.5
M2_48
9.5
M2_49
9.5
M2_50
9.3
M2_51
9.2
M2_52
9.0
M2_53
8.3
M2_54
8.3
M2_55
8.0
M2_56
7.8
M2_57
7.6
M2_58
7.5
M2_59
7.5
M2_60
6.8
M2_61
5.8
M2_62
5.6
M2_63
5.6
M2_64
5.5
M2_65
5.5
M2_66
5.2
M2_67
5.1
M2_68
5.0
M2_69
4.7
M2_70
4.7
M2_71
4.6
M2_72
4.3
M2_73
4.3
M2_74
4.1
M2_75
3.4
M2_76
3.2
M2_77
3.1
M2_78
3.0
M2_79
2.8
M2_80
2.8
M2_81
2.6
M2_82
2.4
M2_83
2.4
M2_84
2.3
M2_85
2.1
M2_86
2.1
M2_87
2.0
M2_88
1.0
M2_89
1.0
M2_90
0.6
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