A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.7
nTPM
Monaco:
64.2
nTPM
Schmiedel:
24.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.7
HPA sample
nTPM
Classical monocyte nTPM: 22.7
Samples: 6
Max nTPM: 31.7
Min nTPM: 16.3
P10809_1003
20.2
P10809_1020
20.4
P10809_1039
31.7
P10809_1058
24.9
P10809_1080
22.4
P10809_1107
16.3
Intermediate monocyte nTPM: 18.5
Samples: 6
Max nTPM: 27.8
Min nTPM: 11.5
P10809_1004
16.5
P10809_1023
27.8
P10809_1042
15.6
P10809_1061
19.7
P10809_1081
19.7
P10809_1108
11.5
Non-classical monocyte nTPM: 19.1
Samples: 5
Max nTPM: 28.5
Min nTPM: 10.6
P10809_1005
19.6
P10809_1053
16.2
P10809_1072
28.5
P10809_1082
20.5
P10809_1109
10.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.2
Monaco sample
nTPM
Classical monocyte nTPM: 55.1
Samples: 4
Max nTPM: 70.8
Min nTPM: 32.3
RHH5313_R3680
70.8
RHH5221_R3593
32.3
RHH5250_R3622
46.8
RHH5279_R3651
70.7
Intermediate monocyte nTPM: 51.7
Samples: 4
Max nTPM: 80.4
Min nTPM: 26.0
RHH5314_R3681
58.0
RHH5222_R3594
42.5
RHH5251_R3623
26.0
RHH5280_R3652
80.4
Non-classical monocyte nTPM: 64.2
Samples: 4
Max nTPM: 79.4
Min nTPM: 45.2
RHH5315_R3682
58.7
RHH5223_R3595
73.6
RHH5252_R3624
45.2
RHH5281_R3653
79.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.7
Schmiedel sample id
TPM
Classical monocyte TPM: 15.7
Samples: 91
Max TPM: 25.0
Min TPM: 9.0
MONOCYTES_1
25.0
MONOCYTES_2
24.3
MONOCYTES_3
23.3
MONOCYTES_4
22.6
MONOCYTES_5
22.1
MONOCYTES_6
22.0
MONOCYTES_7
21.8
MONOCYTES_8
21.0
MONOCYTES_9
20.2
MONOCYTES_10
20.0
MONOCYTES_11
19.4
MONOCYTES_12
19.3
MONOCYTES_13
19.3
MONOCYTES_14
19.1
MONOCYTES_15
19.0
MONOCYTES_16
18.6
MONOCYTES_17
18.3
MONOCYTES_18
18.3
MONOCYTES_19
18.3
MONOCYTES_20
18.2
MONOCYTES_21
18.1
MONOCYTES_22
18.1
MONOCYTES_23
18.1
MONOCYTES_24
18.1
MONOCYTES_25
18.0
MONOCYTES_26
17.9
MONOCYTES_27
17.7
MONOCYTES_28
17.6
MONOCYTES_29
17.5
MONOCYTES_30
17.4
MONOCYTES_31
17.3
MONOCYTES_32
17.2
MONOCYTES_33
17.1
MONOCYTES_34
17.1
MONOCYTES_35
17.0
MONOCYTES_36
16.7
MONOCYTES_37
16.6
MONOCYTES_38
16.6
MONOCYTES_39
16.4
MONOCYTES_40
16.3
MONOCYTES_41
16.3
MONOCYTES_42
16.2
MONOCYTES_43
15.9
MONOCYTES_44
15.9
MONOCYTES_45
15.6
MONOCYTES_46
15.5
MONOCYTES_47
15.5
MONOCYTES_48
15.2
MONOCYTES_49
15.2
MONOCYTES_50
14.8
MONOCYTES_51
14.8
MONOCYTES_52
14.7
MONOCYTES_53
14.7
MONOCYTES_54
14.7
MONOCYTES_55
14.5
MONOCYTES_56
14.4
MONOCYTES_57
14.3
MONOCYTES_58
14.3
MONOCYTES_59
14.1
MONOCYTES_60
14.1
MONOCYTES_61
14.1
MONOCYTES_62
14.0
MONOCYTES_63
13.8
MONOCYTES_64
13.8
MONOCYTES_65
13.8
MONOCYTES_66
13.6
MONOCYTES_67
13.6
MONOCYTES_68
13.3
MONOCYTES_69
12.9
MONOCYTES_70
12.8
MONOCYTES_71
12.8
MONOCYTES_72
12.0
MONOCYTES_73
11.8
MONOCYTES_74
11.7
MONOCYTES_75
11.7
MONOCYTES_76
11.7
MONOCYTES_77
11.6
MONOCYTES_78
11.5
MONOCYTES_79
11.5
MONOCYTES_80
11.4
MONOCYTES_81
11.3
MONOCYTES_82
11.3
MONOCYTES_83
11.2
MONOCYTES_84
11.0
MONOCYTES_85
10.9
MONOCYTES_86
10.9
MONOCYTES_87
10.4
MONOCYTES_88
10.1
MONOCYTES_89
10.0
MONOCYTES_90
9.6
MONOCYTES_91
9.0
Show allShow less
Non-classical monocyte TPM: 24.7
Samples: 90
Max TPM: 34.3
Min TPM: 16.3
M2_1
34.3
M2_2
33.9
M2_3
33.1
M2_4
33.0
M2_5
32.9
M2_6
32.3
M2_7
32.1
M2_8
31.9
M2_9
31.8
M2_10
31.2
M2_11
31.0
M2_12
30.4
M2_13
30.3
M2_14
30.1
M2_15
28.9
M2_16
28.9
M2_17
28.6
M2_18
28.2
M2_19
27.9
M2_20
27.9
M2_21
27.7
M2_22
27.4
M2_23
27.1
M2_24
27.0
M2_25
26.5
M2_26
26.3
M2_27
26.3
M2_28
26.3
M2_29
25.9
M2_30
25.7
M2_31
25.6
M2_32
25.6
M2_33
25.3
M2_34
25.2
M2_35
25.1
M2_36
24.9
M2_37
24.9
M2_38
24.7
M2_39
24.7
M2_40
24.5
M2_41
24.4
M2_42
24.4
M2_43
24.0
M2_44
23.9
M2_45
23.9
M2_46
23.9
M2_47
23.5
M2_48
23.5
M2_49
23.3
M2_50
23.1
M2_51
23.1
M2_52
23.1
M2_53
23.1
M2_54
22.9
M2_55
22.9
M2_56
22.5
M2_57
22.5
M2_58
22.4
M2_59
22.4
M2_60
22.3
M2_61
22.3
M2_62
22.2
M2_63
22.1
M2_64
22.0
M2_65
22.0
M2_66
21.9
M2_67
21.9
M2_68
21.8
M2_69
21.8
M2_70
21.7
M2_71
21.6
M2_72
21.4
M2_73
21.4
M2_74
21.3
M2_75
21.3
M2_76
21.0
M2_77
20.9
M2_78
20.6
M2_79
20.4
M2_80
20.3
M2_81
20.2
M2_82
20.2
M2_83
19.9
M2_84
19.8
M2_85
19.8
M2_86
19.7
M2_87
18.9
M2_88
18.0
M2_89
17.5
M2_90
16.3
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
