A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.3
nTPM
Monaco:
51.4
nTPM
Schmiedel:
133.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.3
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.6
P10809_1003
0.7
P10809_1020
1.3
P10809_1039
0.8
P10809_1058
0.8
P10809_1080
0.6
P10809_1107
1.0
Intermediate monocyte nTPM: 4.1
Samples: 6
Max nTPM: 5.0
Min nTPM: 3.0
P10809_1004
4.0
P10809_1023
4.3
P10809_1042
4.7
P10809_1061
5.0
P10809_1081
3.0
P10809_1108
3.4
Non-classical monocyte nTPM: 7.3
Samples: 5
Max nTPM: 10.4
Min nTPM: 1.2
P10809_1005
8.4
P10809_1053
10.4
P10809_1072
1.2
P10809_1082
6.7
P10809_1109
9.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.4
Monaco sample
nTPM
Classical monocyte nTPM: 11.2
Samples: 4
Max nTPM: 14.4
Min nTPM: 7.7
RHH5313_R3680
7.7
RHH5221_R3593
12.4
RHH5250_R3622
10.2
RHH5279_R3651
14.4
Intermediate monocyte nTPM: 31.4
Samples: 4
Max nTPM: 41.2
Min nTPM: 21.6
RHH5314_R3681
23.8
RHH5222_R3594
41.2
RHH5251_R3623
39.1
RHH5280_R3652
21.6
Non-classical monocyte nTPM: 51.4
Samples: 4
Max nTPM: 63.0
Min nTPM: 40.1
RHH5315_R3682
44.7
RHH5223_R3595
40.1
RHH5252_R3624
57.7
RHH5281_R3653
63.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
133.4
Schmiedel sample id
TPM
Classical monocyte TPM: 19.6
Samples: 91
Max TPM: 31.9
Min TPM: 12.0
MONOCYTES_1
31.9
MONOCYTES_2
29.6
MONOCYTES_3
28.4
MONOCYTES_4
28.1
MONOCYTES_5
28.0
MONOCYTES_6
25.7
MONOCYTES_7
25.6
MONOCYTES_8
25.3
MONOCYTES_9
25.0
MONOCYTES_10
24.6
MONOCYTES_11
24.2
MONOCYTES_12
23.6
MONOCYTES_13
23.6
MONOCYTES_14
23.6
MONOCYTES_15
23.5
MONOCYTES_16
22.8
MONOCYTES_17
22.6
MONOCYTES_18
22.4
MONOCYTES_19
22.4
MONOCYTES_20
22.3
MONOCYTES_21
22.3
MONOCYTES_22
22.3
MONOCYTES_23
22.2
MONOCYTES_24
22.2
MONOCYTES_25
22.1
MONOCYTES_26
22.0
MONOCYTES_27
21.9
MONOCYTES_28
21.4
MONOCYTES_29
21.3
MONOCYTES_30
21.0
MONOCYTES_31
20.9
MONOCYTES_32
20.8
MONOCYTES_33
20.8
MONOCYTES_34
20.6
MONOCYTES_35
20.4
MONOCYTES_36
20.2
MONOCYTES_37
20.1
MONOCYTES_38
20.1
MONOCYTES_39
19.8
MONOCYTES_40
19.8
MONOCYTES_41
19.6
MONOCYTES_42
19.6
MONOCYTES_43
19.4
MONOCYTES_44
19.4
MONOCYTES_45
19.3
MONOCYTES_46
19.1
MONOCYTES_47
18.9
MONOCYTES_48
18.9
MONOCYTES_49
18.7
MONOCYTES_50
18.6
MONOCYTES_51
18.6
MONOCYTES_52
18.5
MONOCYTES_53
18.5
MONOCYTES_54
18.5
MONOCYTES_55
18.4
MONOCYTES_56
18.4
MONOCYTES_57
18.2
MONOCYTES_58
18.2
MONOCYTES_59
18.1
MONOCYTES_60
18.1
MONOCYTES_61
17.9
MONOCYTES_62
17.8
MONOCYTES_63
17.7
MONOCYTES_64
17.3
MONOCYTES_65
17.3
MONOCYTES_66
16.9
MONOCYTES_67
16.9
MONOCYTES_68
16.3
MONOCYTES_69
16.1
MONOCYTES_70
16.0
MONOCYTES_71
15.9
MONOCYTES_72
15.9
MONOCYTES_73
15.8
MONOCYTES_74
15.7
MONOCYTES_75
15.7
MONOCYTES_76
15.7
MONOCYTES_77
15.6
MONOCYTES_78
15.5
MONOCYTES_79
15.4
MONOCYTES_80
15.4
MONOCYTES_81
15.2
MONOCYTES_82
15.1
MONOCYTES_83
14.9
MONOCYTES_84
14.8
MONOCYTES_85
14.6
MONOCYTES_86
14.5
MONOCYTES_87
14.5
MONOCYTES_88
14.5
MONOCYTES_89
14.4
MONOCYTES_90
13.9
MONOCYTES_91
12.0
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Non-classical monocyte TPM: 133.4
Samples: 90
Max TPM: 188.0
Min TPM: 86.0
M2_1
188.0
M2_2
183.0
M2_3
176.2
M2_4
176.2
M2_5
171.8
M2_6
171.1
M2_7
167.3
M2_8
166.6
M2_9
158.9
M2_10
158.5
M2_11
155.7
M2_12
155.0
M2_13
153.9
M2_14
152.6
M2_15
152.2
M2_16
150.8
M2_17
149.9
M2_18
149.5
M2_19
148.2
M2_20
148.1
M2_21
146.6
M2_22
146.1
M2_23
144.6
M2_24
144.0
M2_25
143.3
M2_26
143.0
M2_27
141.8
M2_28
141.0
M2_29
139.5
M2_30
138.3
M2_31
137.9
M2_32
137.9
M2_33
137.6
M2_34
136.8
M2_35
136.5
M2_36
135.8
M2_37
135.8
M2_38
135.7
M2_39
135.2
M2_40
134.7
M2_41
134.0
M2_42
133.8
M2_43
133.5
M2_44
133.5
M2_45
133.4
M2_46
132.8
M2_47
132.6
M2_48
132.2
M2_49
131.7
M2_50
131.3
M2_51
131.0
M2_52
129.6
M2_53
129.5
M2_54
129.4
M2_55
129.1
M2_56
128.9
M2_57
128.4
M2_58
126.0
M2_59
125.8
M2_60
125.5
M2_61
124.8
M2_62
124.5
M2_63
124.1
M2_64
121.6
M2_65
121.4
M2_66
120.4
M2_67
119.8
M2_68
119.3
M2_69
119.1
M2_70
118.1
M2_71
117.6
M2_72
117.3
M2_73
117.1
M2_74
115.5
M2_75
115.3
M2_76
114.6
M2_77
114.2
M2_78
112.7
M2_79
112.6
M2_80
112.4
M2_81
111.3
M2_82
105.9
M2_83
105.5
M2_84
104.5
M2_85
100.0
M2_86
99.5
M2_87
98.7
M2_88
98.3
M2_89
96.8
M2_90
86.0
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