A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
657.1
nTPM
Monaco:
1036.6
nTPM
Schmiedel:
2098.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
657.1
HPA sample
nTPM
NK-cell nTPM: 657.1
Samples: 6
Max nTPM: 917.1
Min nTPM: 418.1
P10809_1013
418.1
P10809_1033
917.1
P10809_1052
654.0
P10809_1071
629.3
P10809_1093
606.1
P10809_1103
717.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1036.6
Monaco sample
nTPM
NK-cell nTPM: 1036.6
Samples: 4
Max nTPM: 1228.7
Min nTPM: 898.3
RHH5316_R3683
1228.7
RHH5224_R3596
1048.8
RHH5253_R3625
898.3
RHH5282_R3654
970.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2098.7
Schmiedel sample id
TPM
NK-cell TPM: 2098.7
Samples: 90
Max TPM: 3172.8
Min TPM: 1221.7
NK_1
3172.8
NK_2
2932.1
NK_3
2881.0
NK_4
2859.4
NK_5
2760.2
NK_6
2729.5
NK_7
2721.0
NK_8
2718.9
NK_9
2660.6
NK_10
2620.4
NK_11
2598.9
NK_12
2564.6
NK_13
2564.2
NK_14
2527.3
NK_15
2505.5
NK_16
2499.7
NK_17
2484.8
NK_18
2466.6
NK_19
2465.7
NK_20
2459.4
NK_21
2455.3
NK_22
2431.0
NK_23
2422.2
NK_24
2391.9
NK_25
2379.4
NK_26
2355.0
NK_27
2353.0
NK_28
2321.8
NK_29
2293.0
NK_30
2292.7
NK_31
2283.1
NK_32
2273.4
NK_33
2241.4
NK_34
2229.3
NK_35
2221.7
NK_36
2201.2
NK_37
2136.7
NK_38
2132.0
NK_39
2118.0
NK_40
2111.8
NK_41
2103.5
NK_42
2088.0
NK_43
2081.7
NK_44
2074.2
NK_45
2069.1
NK_46
2055.6
NK_47
2025.4
NK_48
2021.1
NK_49
2004.8
NK_50
2001.4
NK_51
1994.0
NK_52
1982.1
NK_53
1979.5
NK_54
1975.3
NK_55
1950.6
NK_56
1944.0
NK_57
1939.4
NK_58
1939.0
NK_59
1932.6
NK_60
1926.0
NK_61
1892.9
NK_62
1863.1
NK_63
1861.7
NK_64
1851.1
NK_65
1849.7
NK_66
1847.4
NK_67
1841.8
NK_68
1833.8
NK_69
1816.5
NK_70
1812.8
NK_71
1812.3
NK_72
1780.9
NK_73
1776.1
NK_74
1769.8
NK_75
1742.9
NK_76
1689.0
NK_77
1631.2
NK_78
1624.6
NK_79
1597.5
NK_80
1586.2
NK_81
1583.0
NK_82
1564.7
NK_83
1527.5
NK_84
1501.4
NK_85
1499.7
NK_86
1469.4
NK_87
1386.6
NK_88
1380.6
NK_89
1344.7
NK_90
1221.7
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