A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.8
nTPM
Monaco:
40.4
nTPM
Schmiedel:
24.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.8
HPA sample
nTPM
Classical monocyte nTPM: 13.4
Samples: 6
Max nTPM: 19.0
Min nTPM: 10.3
P10809_1003
10.3
P10809_1020
17.0
P10809_1039
19.0
P10809_1058
12.2
P10809_1080
11.0
P10809_1107
11.0
Intermediate monocyte nTPM: 15.6
Samples: 6
Max nTPM: 30.3
Min nTPM: 8.7
P10809_1004
14.0
P10809_1023
12.1
P10809_1042
14.8
P10809_1061
30.3
P10809_1081
8.7
P10809_1108
13.7
Non-classical monocyte nTPM: 16.8
Samples: 5
Max nTPM: 25.6
Min nTPM: 7.0
P10809_1005
13.6
P10809_1053
21.4
P10809_1072
25.6
P10809_1082
7.0
P10809_1109
16.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.4
Monaco sample
nTPM
Classical monocyte nTPM: 36.5
Samples: 4
Max nTPM: 44.8
Min nTPM: 22.1
RHH5313_R3680
39.1
RHH5221_R3593
39.8
RHH5250_R3622
44.8
RHH5279_R3651
22.1
Intermediate monocyte nTPM: 39.5
Samples: 4
Max nTPM: 44.7
Min nTPM: 35.5
RHH5314_R3681
35.5
RHH5222_R3594
37.7
RHH5251_R3623
39.9
RHH5280_R3652
44.7
Non-classical monocyte nTPM: 40.4
Samples: 4
Max nTPM: 53.2
Min nTPM: 31.0
RHH5315_R3682
45.1
RHH5223_R3595
53.2
RHH5252_R3624
32.3
RHH5281_R3653
31.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.5
Schmiedel sample id
TPM
Classical monocyte TPM: 19.1
Samples: 91
Max TPM: 26.3
Min TPM: 12.3
MONOCYTES_1
26.3
MONOCYTES_2
24.7
MONOCYTES_3
23.6
MONOCYTES_4
23.5
MONOCYTES_5
23.4
MONOCYTES_6
23.4
MONOCYTES_7
22.9
MONOCYTES_8
22.9
MONOCYTES_9
22.4
MONOCYTES_10
22.4
MONOCYTES_11
22.2
MONOCYTES_12
22.2
MONOCYTES_13
22.2
MONOCYTES_14
22.0
MONOCYTES_15
21.9
MONOCYTES_16
21.8
MONOCYTES_17
21.7
MONOCYTES_18
21.7
MONOCYTES_19
21.6
MONOCYTES_20
21.5
MONOCYTES_21
21.2
MONOCYTES_22
20.8
MONOCYTES_23
20.7
MONOCYTES_24
20.7
MONOCYTES_25
20.7
MONOCYTES_26
20.5
MONOCYTES_27
20.5
MONOCYTES_28
20.3
MONOCYTES_29
20.2
MONOCYTES_30
20.2
MONOCYTES_31
20.0
MONOCYTES_32
20.0
MONOCYTES_33
19.9
MONOCYTES_34
19.9
MONOCYTES_35
19.8
MONOCYTES_36
19.8
MONOCYTES_37
19.6
MONOCYTES_38
19.5
MONOCYTES_39
19.5
MONOCYTES_40
19.4
MONOCYTES_41
19.3
MONOCYTES_42
19.3
MONOCYTES_43
19.3
MONOCYTES_44
19.2
MONOCYTES_45
19.2
MONOCYTES_46
19.1
MONOCYTES_47
19.1
MONOCYTES_48
18.9
MONOCYTES_49
18.8
MONOCYTES_50
18.7
MONOCYTES_51
18.5
MONOCYTES_52
18.5
MONOCYTES_53
18.5
MONOCYTES_54
18.4
MONOCYTES_55
18.4
MONOCYTES_56
18.3
MONOCYTES_57
18.2
MONOCYTES_58
18.1
MONOCYTES_59
17.9
MONOCYTES_60
17.9
MONOCYTES_61
17.9
MONOCYTES_62
17.7
MONOCYTES_63
17.6
MONOCYTES_64
17.6
MONOCYTES_65
17.5
MONOCYTES_66
17.5
MONOCYTES_67
17.5
MONOCYTES_68
17.5
MONOCYTES_69
17.5
MONOCYTES_70
17.4
MONOCYTES_71
17.3
MONOCYTES_72
17.2
MONOCYTES_73
17.2
MONOCYTES_74
17.1
MONOCYTES_75
17.1
MONOCYTES_76
17.0
MONOCYTES_77
16.9
MONOCYTES_78
16.8
MONOCYTES_79
16.6
MONOCYTES_80
16.5
MONOCYTES_81
16.0
MONOCYTES_82
15.8
MONOCYTES_83
15.6
MONOCYTES_84
15.6
MONOCYTES_85
15.5
MONOCYTES_86
15.3
MONOCYTES_87
14.7
MONOCYTES_88
14.6
MONOCYTES_89
13.5
MONOCYTES_90
13.1
MONOCYTES_91
12.3
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Non-classical monocyte TPM: 24.5
Samples: 90
Max TPM: 32.7
Min TPM: 15.7
M2_1
32.7
M2_2
31.8
M2_3
31.5
M2_4
31.3
M2_5
31.1
M2_6
31.0
M2_7
31.0
M2_8
30.9
M2_9
30.4
M2_10
30.1
M2_11
29.0
M2_12
29.0
M2_13
28.9
M2_14
28.8
M2_15
28.7
M2_16
28.2
M2_17
28.2
M2_18
28.0
M2_19
27.6
M2_20
27.3
M2_21
27.2
M2_22
26.7
M2_23
26.7
M2_24
26.7
M2_25
26.6
M2_26
26.6
M2_27
26.6
M2_28
26.5
M2_29
26.0
M2_30
25.9
M2_31
25.9
M2_32
25.7
M2_33
25.5
M2_34
25.3
M2_35
25.0
M2_36
24.7
M2_37
24.7
M2_38
24.7
M2_39
24.6
M2_40
24.5
M2_41
24.4
M2_42
24.4
M2_43
24.3
M2_44
24.3
M2_45
24.2
M2_46
24.0
M2_47
24.0
M2_48
23.8
M2_49
23.7
M2_50
23.7
M2_51
23.6
M2_52
23.6
M2_53
23.3
M2_54
23.2
M2_55
23.2
M2_56
23.1
M2_57
23.1
M2_58
23.0
M2_59
23.0
M2_60
22.9
M2_61
22.8
M2_62
22.7
M2_63
22.7
M2_64
22.7
M2_65
22.5
M2_66
22.3
M2_67
21.7
M2_68
21.5
M2_69
21.5
M2_70
21.5
M2_71
21.4
M2_72
21.3
M2_73
21.1
M2_74
21.1
M2_75
21.0
M2_76
20.9
M2_77
20.7
M2_78
20.5
M2_79
20.4
M2_80
20.4
M2_81
20.2
M2_82
20.2
M2_83
20.0
M2_84
20.0
M2_85
19.8
M2_86
19.4
M2_87
18.9
M2_88
18.5
M2_89
18.4
M2_90
15.7
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