A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.3
nTPM
Monaco:
39.8
nTPM
Schmiedel:
51.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.3
HPA sample
nTPM
Classical monocyte nTPM: 4.3
Samples: 6
Max nTPM: 5.5
Min nTPM: 3.2
P10809_1003
4.2
P10809_1020
3.2
P10809_1039
4.2
P10809_1058
5.5
P10809_1080
5.0
P10809_1107
3.8
Intermediate monocyte nTPM: 3.0
Samples: 6
Max nTPM: 4.4
Min nTPM: 1.3
P10809_1004
3.9
P10809_1023
4.4
P10809_1042
3.2
P10809_1061
2.1
P10809_1081
3.2
P10809_1108
1.3
Non-classical monocyte nTPM: 2.4
Samples: 5
Max nTPM: 5.1
Min nTPM: 0.1
P10809_1005
5.1
P10809_1053
1.7
P10809_1072
0.1
P10809_1082
3.4
P10809_1109
1.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.8
Monaco sample
nTPM
Classical monocyte nTPM: 39.8
Samples: 4
Max nTPM: 53.2
Min nTPM: 31.4
RHH5313_R3680
31.4
RHH5221_R3593
53.2
RHH5250_R3622
40.0
RHH5279_R3651
34.5
Intermediate monocyte nTPM: 34.9
Samples: 4
Max nTPM: 39.6
Min nTPM: 27.0
RHH5314_R3681
38.0
RHH5222_R3594
39.6
RHH5251_R3623
27.0
RHH5280_R3652
34.9
Non-classical monocyte nTPM: 27.9
Samples: 4
Max nTPM: 42.1
Min nTPM: 15.4
RHH5315_R3682
15.4
RHH5223_R3595
20.4
RHH5252_R3624
33.6
RHH5281_R3653
42.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.0
Schmiedel sample id
TPM
Classical monocyte TPM: 48.0
Samples: 91
Max TPM: 66.0
Min TPM: 32.8
MONOCYTES_1
66.0
MONOCYTES_2
65.5
MONOCYTES_3
60.9
MONOCYTES_4
60.5
MONOCYTES_5
59.1
MONOCYTES_6
59.0
MONOCYTES_7
58.8
MONOCYTES_8
58.4
MONOCYTES_9
57.9
MONOCYTES_10
57.1
MONOCYTES_11
56.6
MONOCYTES_12
56.4
MONOCYTES_13
56.4
MONOCYTES_14
55.9
MONOCYTES_15
55.9
MONOCYTES_16
55.7
MONOCYTES_17
55.2
MONOCYTES_18
55.2
MONOCYTES_19
54.5
MONOCYTES_20
54.4
MONOCYTES_21
53.6
MONOCYTES_22
53.3
MONOCYTES_23
52.9
MONOCYTES_24
52.8
MONOCYTES_25
52.5
MONOCYTES_26
52.0
MONOCYTES_27
51.7
MONOCYTES_28
51.5
MONOCYTES_29
51.4
MONOCYTES_30
51.4
MONOCYTES_31
51.1
MONOCYTES_32
50.9
MONOCYTES_33
50.7
MONOCYTES_34
50.7
MONOCYTES_35
49.6
MONOCYTES_36
49.4
MONOCYTES_37
49.3
MONOCYTES_38
49.2
MONOCYTES_39
49.2
MONOCYTES_40
49.2
MONOCYTES_41
49.1
MONOCYTES_42
49.0
MONOCYTES_43
48.9
MONOCYTES_44
48.9
MONOCYTES_45
48.7
MONOCYTES_46
48.1
MONOCYTES_47
47.7
MONOCYTES_48
47.2
MONOCYTES_49
46.9
MONOCYTES_50
46.8
MONOCYTES_51
46.8
MONOCYTES_52
46.4
MONOCYTES_53
45.9
MONOCYTES_54
45.9
MONOCYTES_55
45.8
MONOCYTES_56
45.8
MONOCYTES_57
45.3
MONOCYTES_58
44.7
MONOCYTES_59
44.6
MONOCYTES_60
44.5
MONOCYTES_61
44.5
MONOCYTES_62
44.4
MONOCYTES_63
44.4
MONOCYTES_64
44.4
MONOCYTES_65
43.7
MONOCYTES_66
43.7
MONOCYTES_67
43.1
MONOCYTES_68
42.7
MONOCYTES_69
42.7
MONOCYTES_70
42.6
MONOCYTES_71
42.2
MONOCYTES_72
41.6
MONOCYTES_73
41.5
MONOCYTES_74
41.2
MONOCYTES_75
41.1
MONOCYTES_76
40.8
MONOCYTES_77
40.3
MONOCYTES_78
40.2
MONOCYTES_79
40.2
MONOCYTES_80
40.2
MONOCYTES_81
40.2
MONOCYTES_82
40.0
MONOCYTES_83
39.9
MONOCYTES_84
38.4
MONOCYTES_85
37.9
MONOCYTES_86
37.8
MONOCYTES_87
36.5
MONOCYTES_88
33.9
MONOCYTES_89
33.4
MONOCYTES_90
33.1
MONOCYTES_91
32.8
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Non-classical monocyte TPM: 51.0
Samples: 90
Max TPM: 80.9
Min TPM: 29.7
M2_1
80.9
M2_2
74.5
M2_3
72.5
M2_4
69.4
M2_5
67.7
M2_6
66.2
M2_7
66.2
M2_8
64.9
M2_9
64.8
M2_10
64.0
M2_11
62.5
M2_12
62.5
M2_13
60.8
M2_14
60.2
M2_15
60.1
M2_16
60.0
M2_17
59.6
M2_18
57.5
M2_19
56.5
M2_20
55.8
M2_21
55.8
M2_22
55.5
M2_23
55.2
M2_24
55.2
M2_25
54.8
M2_26
54.5
M2_27
54.4
M2_28
53.7
M2_29
53.7
M2_30
53.3
M2_31
53.1
M2_32
52.9
M2_33
52.9
M2_34
52.5
M2_35
52.2
M2_36
51.9
M2_37
51.9
M2_38
51.5
M2_39
51.3
M2_40
51.2
M2_41
50.9
M2_42
50.7
M2_43
50.6
M2_44
49.7
M2_45
49.7
M2_46
49.5
M2_47
49.3
M2_48
49.0
M2_49
48.9
M2_50
48.8
M2_51
48.4
M2_52
48.3
M2_53
48.2
M2_54
48.2
M2_55
47.9
M2_56
47.7
M2_57
47.5
M2_58
47.4
M2_59
47.1
M2_60
46.7
M2_61
46.6
M2_62
46.5
M2_63
46.4
M2_64
46.3
M2_65
46.3
M2_66
46.3
M2_67
45.9
M2_68
45.5
M2_69
45.3
M2_70
44.6
M2_71
44.6
M2_72
43.0
M2_73
42.9
M2_74
42.9
M2_75
42.8
M2_76
42.7
M2_77
42.6
M2_78
41.2
M2_79
40.8
M2_80
39.8
M2_81
39.4
M2_82
39.1
M2_83
39.1
M2_84
39.0
M2_85
38.5
M2_86
38.3
M2_87
37.9
M2_88
37.5
M2_89
36.4
M2_90
29.7
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