A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.6
nTPM
Monaco:
27.6
nTPM
Schmiedel:
57.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.6
HPA sample
nTPM
Classical monocyte nTPM: 18.2
Samples: 6
Max nTPM: 25.6
Min nTPM: 8.8
P10809_1003
8.8
P10809_1020
12.9
P10809_1039
18.0
P10809_1058
25.6
P10809_1080
20.7
P10809_1107
23.0
Intermediate monocyte nTPM: 16.9
Samples: 6
Max nTPM: 22.5
Min nTPM: 8.9
P10809_1004
8.9
P10809_1023
14.8
P10809_1042
22.5
P10809_1061
20.2
P10809_1081
19.5
P10809_1108
15.6
Non-classical monocyte nTPM: 25.6
Samples: 5
Max nTPM: 59.2
Min nTPM: 12.0
P10809_1005
12.0
P10809_1053
13.9
P10809_1072
59.2
P10809_1082
22.0
P10809_1109
20.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.6
Monaco sample
nTPM
Classical monocyte nTPM: 26.2
Samples: 4
Max nTPM: 27.6
Min nTPM: 23.0
RHH5313_R3680
26.7
RHH5221_R3593
27.4
RHH5250_R3622
27.6
RHH5279_R3651
23.0
Intermediate monocyte nTPM: 27.6
Samples: 4
Max nTPM: 32.3
Min nTPM: 23.2
RHH5314_R3681
32.3
RHH5222_R3594
23.2
RHH5251_R3623
26.4
RHH5280_R3652
28.6
Non-classical monocyte nTPM: 23.0
Samples: 4
Max nTPM: 32.6
Min nTPM: 14.8
RHH5315_R3682
17.7
RHH5223_R3595
27.1
RHH5252_R3624
14.8
RHH5281_R3653
32.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.9
Schmiedel sample id
TPM
Classical monocyte TPM: 45.4
Samples: 91
Max TPM: 60.2
Min TPM: 31.7
MONOCYTES_1
60.2
MONOCYTES_2
57.6
MONOCYTES_3
57.6
MONOCYTES_4
57.2
MONOCYTES_5
56.3
MONOCYTES_6
56.1
MONOCYTES_7
55.1
MONOCYTES_8
54.4
MONOCYTES_9
54.3
MONOCYTES_10
54.1
MONOCYTES_11
54.0
MONOCYTES_12
53.9
MONOCYTES_13
53.9
MONOCYTES_14
53.7
MONOCYTES_15
53.2
MONOCYTES_16
53.1
MONOCYTES_17
53.1
MONOCYTES_18
52.5
MONOCYTES_19
52.3
MONOCYTES_20
52.1
MONOCYTES_21
51.4
MONOCYTES_22
51.3
MONOCYTES_23
51.1
MONOCYTES_24
51.0
MONOCYTES_25
50.9
MONOCYTES_26
50.5
MONOCYTES_27
49.8
MONOCYTES_28
49.7
MONOCYTES_29
49.5
MONOCYTES_30
49.4
MONOCYTES_31
48.6
MONOCYTES_32
48.3
MONOCYTES_33
47.9
MONOCYTES_34
47.8
MONOCYTES_35
47.8
MONOCYTES_36
46.8
MONOCYTES_37
46.4
MONOCYTES_38
45.6
MONOCYTES_39
45.5
MONOCYTES_40
45.4
MONOCYTES_41
44.7
MONOCYTES_42
44.7
MONOCYTES_43
44.6
MONOCYTES_44
44.5
MONOCYTES_45
44.5
MONOCYTES_46
44.5
MONOCYTES_47
44.2
MONOCYTES_48
44.1
MONOCYTES_49
44.0
MONOCYTES_50
43.9
MONOCYTES_51
43.7
MONOCYTES_52
43.7
MONOCYTES_53
43.6
MONOCYTES_54
43.4
MONOCYTES_55
43.2
MONOCYTES_56
43.1
MONOCYTES_57
42.8
MONOCYTES_58
42.8
MONOCYTES_59
42.6
MONOCYTES_60
42.5
MONOCYTES_61
42.1
MONOCYTES_62
42.1
MONOCYTES_63
41.6
MONOCYTES_64
41.3
MONOCYTES_65
40.9
MONOCYTES_66
40.8
MONOCYTES_67
40.7
MONOCYTES_68
40.6
MONOCYTES_69
40.6
MONOCYTES_70
40.0
MONOCYTES_71
39.7
MONOCYTES_72
39.7
MONOCYTES_73
38.9
MONOCYTES_74
38.9
MONOCYTES_75
38.8
MONOCYTES_76
38.7
MONOCYTES_77
38.6
MONOCYTES_78
38.5
MONOCYTES_79
38.3
MONOCYTES_80
38.0
MONOCYTES_81
37.9
MONOCYTES_82
37.8
MONOCYTES_83
37.4
MONOCYTES_84
37.1
MONOCYTES_85
36.0
MONOCYTES_86
35.6
MONOCYTES_87
34.8
MONOCYTES_88
34.3
MONOCYTES_89
33.9
MONOCYTES_90
31.8
MONOCYTES_91
31.7
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Non-classical monocyte TPM: 57.8
Samples: 90
Max TPM: 93.2
Min TPM: 32.4
M2_1
93.2
M2_2
85.0
M2_3
80.5
M2_4
77.8
M2_5
75.7
M2_6
74.5
M2_7
74.3
M2_8
74.3
M2_9
74.1
M2_10
73.0
M2_11
72.8
M2_12
70.6
M2_13
69.5
M2_14
67.7
M2_15
67.4
M2_16
65.9
M2_17
65.8
M2_18
65.4
M2_19
65.2
M2_20
64.2
M2_21
63.8
M2_22
62.9
M2_23
62.5
M2_24
62.3
M2_25
61.3
M2_26
61.3
M2_27
61.2
M2_28
61.0
M2_29
60.5
M2_30
60.1
M2_31
59.7
M2_32
59.6
M2_33
59.4
M2_34
59.2
M2_35
58.5
M2_36
58.3
M2_37
58.2
M2_38
57.6
M2_39
57.6
M2_40
57.4
M2_41
57.1
M2_42
57.0
M2_43
56.4
M2_44
56.4
M2_45
56.3
M2_46
56.2
M2_47
55.0
M2_48
54.8
M2_49
54.5
M2_50
53.8
M2_51
53.5
M2_52
53.3
M2_53
53.1
M2_54
53.0
M2_55
52.8
M2_56
52.7
M2_57
52.3
M2_58
52.2
M2_59
52.2
M2_60
52.1
M2_61
51.7
M2_62
51.4
M2_63
51.3
M2_64
51.2
M2_65
50.9
M2_66
50.6
M2_67
50.5
M2_68
50.5
M2_69
50.5
M2_70
50.5
M2_71
50.3
M2_72
50.3
M2_73
50.3
M2_74
50.0
M2_75
49.7
M2_76
49.6
M2_77
49.4
M2_78
49.3
M2_79
49.0
M2_80
48.7
M2_81
48.5
M2_82
48.0
M2_83
47.9
M2_84
47.8
M2_85
47.6
M2_86
46.8
M2_87
46.8
M2_88
45.4
M2_89
45.4
M2_90
32.4
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