A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.1
nTPM
Monaco:
77.1
nTPM
Schmiedel:
19.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
HPA sample
nTPM
Classical monocyte nTPM: 10.7
Samples: 6
Max nTPM: 13.3
Min nTPM: 7.6
P10809_1003
10.7
P10809_1020
13.3
P10809_1039
11.7
P10809_1058
10.0
P10809_1080
11.0
P10809_1107
7.6
Intermediate monocyte nTPM: 11.8
Samples: 6
Max nTPM: 20.5
Min nTPM: 7.1
P10809_1004
11.4
P10809_1023
7.4
P10809_1042
15.0
P10809_1061
20.5
P10809_1081
9.6
P10809_1108
7.1
Non-classical monocyte nTPM: 14.1
Samples: 5
Max nTPM: 25.3
Min nTPM: 7.3
P10809_1005
13.0
P10809_1053
15.7
P10809_1072
25.3
P10809_1082
9.0
P10809_1109
7.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.1
Monaco sample
nTPM
Classical monocyte nTPM: 53.6
Samples: 4
Max nTPM: 80.1
Min nTPM: 37.7
RHH5313_R3680
80.1
RHH5221_R3593
37.7
RHH5250_R3622
46.2
RHH5279_R3651
50.3
Intermediate monocyte nTPM: 72.4
Samples: 4
Max nTPM: 128.2
Min nTPM: 40.6
RHH5314_R3681
60.2
RHH5222_R3594
128.2
RHH5251_R3623
40.6
RHH5280_R3652
60.7
Non-classical monocyte nTPM: 77.1
Samples: 4
Max nTPM: 89.6
Min nTPM: 70.0
RHH5315_R3682
75.4
RHH5223_R3595
89.6
RHH5252_R3624
73.4
RHH5281_R3653
70.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.2
Schmiedel sample id
TPM
Classical monocyte TPM: 10.7
Samples: 91
Max TPM: 15.1
Min TPM: 7.7
MONOCYTES_1
15.1
MONOCYTES_2
14.3
MONOCYTES_3
13.6
MONOCYTES_4
13.4
MONOCYTES_5
13.4
MONOCYTES_6
13.1
MONOCYTES_7
13.0
MONOCYTES_8
12.9
MONOCYTES_9
12.9
MONOCYTES_10
12.9
MONOCYTES_11
12.8
MONOCYTES_12
12.7
MONOCYTES_13
12.7
MONOCYTES_14
12.6
MONOCYTES_15
12.4
MONOCYTES_16
12.4
MONOCYTES_17
12.3
MONOCYTES_18
12.3
MONOCYTES_19
12.2
MONOCYTES_20
12.1
MONOCYTES_21
12.1
MONOCYTES_22
11.8
MONOCYTES_23
11.7
MONOCYTES_24
11.6
MONOCYTES_25
11.6
MONOCYTES_26
11.5
MONOCYTES_27
11.5
MONOCYTES_28
11.5
MONOCYTES_29
11.5
MONOCYTES_30
11.5
MONOCYTES_31
11.5
MONOCYTES_32
11.4
MONOCYTES_33
11.3
MONOCYTES_34
11.2
MONOCYTES_35
11.2
MONOCYTES_36
11.1
MONOCYTES_37
11.1
MONOCYTES_38
11.0
MONOCYTES_39
10.9
MONOCYTES_40
10.8
MONOCYTES_41
10.7
MONOCYTES_42
10.7
MONOCYTES_43
10.7
MONOCYTES_44
10.6
MONOCYTES_45
10.5
MONOCYTES_46
10.4
MONOCYTES_47
10.3
MONOCYTES_48
10.3
MONOCYTES_49
10.3
MONOCYTES_50
10.2
MONOCYTES_51
10.2
MONOCYTES_52
10.2
MONOCYTES_53
10.2
MONOCYTES_54
10.1
MONOCYTES_55
10.1
MONOCYTES_56
10.1
MONOCYTES_57
10.0
MONOCYTES_58
10.0
MONOCYTES_59
9.8
MONOCYTES_60
9.8
MONOCYTES_61
9.7
MONOCYTES_62
9.6
MONOCYTES_63
9.6
MONOCYTES_64
9.6
MONOCYTES_65
9.6
MONOCYTES_66
9.6
MONOCYTES_67
9.5
MONOCYTES_68
9.5
MONOCYTES_69
9.5
MONOCYTES_70
9.5
MONOCYTES_71
9.4
MONOCYTES_72
9.4
MONOCYTES_73
9.4
MONOCYTES_74
9.4
MONOCYTES_75
9.4
MONOCYTES_76
9.2
MONOCYTES_77
9.1
MONOCYTES_78
9.1
MONOCYTES_79
9.0
MONOCYTES_80
9.0
MONOCYTES_81
8.9
MONOCYTES_82
8.8
MONOCYTES_83
8.5
MONOCYTES_84
8.5
MONOCYTES_85
8.4
MONOCYTES_86
8.4
MONOCYTES_87
8.1
MONOCYTES_88
8.1
MONOCYTES_89
8.0
MONOCYTES_90
8.0
MONOCYTES_91
7.7
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Non-classical monocyte TPM: 19.2
Samples: 90
Max TPM: 28.3
Min TPM: 12.8
M2_1
28.3
M2_2
26.6
M2_3
26.3
M2_4
26.2
M2_5
25.8
M2_6
24.9
M2_7
24.7
M2_8
24.4
M2_9
24.2
M2_10
24.0
M2_11
23.5
M2_12
23.5
M2_13
23.2
M2_14
22.8
M2_15
22.6
M2_16
22.4
M2_17
22.1
M2_18
21.9
M2_19
21.9
M2_20
21.8
M2_21
21.6
M2_22
21.2
M2_23
21.2
M2_24
20.8
M2_25
20.8
M2_26
20.4
M2_27
20.3
M2_28
20.2
M2_29
20.2
M2_30
20.1
M2_31
20.1
M2_32
20.0
M2_33
20.0
M2_34
19.9
M2_35
19.7
M2_36
19.6
M2_37
19.4
M2_38
19.2
M2_39
19.0
M2_40
19.0
M2_41
19.0
M2_42
19.0
M2_43
18.9
M2_44
18.8
M2_45
18.8
M2_46
18.7
M2_47
18.5
M2_48
18.5
M2_49
18.5
M2_50
18.4
M2_51
18.2
M2_52
18.1
M2_53
17.9
M2_54
17.9
M2_55
17.8
M2_56
17.8
M2_57
17.8
M2_58
17.6
M2_59
17.5
M2_60
17.3
M2_61
17.3
M2_62
17.2
M2_63
17.1
M2_64
17.1
M2_65
17.1
M2_66
17.0
M2_67
17.0
M2_68
17.0
M2_69
16.9
M2_70
16.6
M2_71
16.5
M2_72
16.3
M2_73
16.2
M2_74
16.2
M2_75
16.2
M2_76
16.1
M2_77
16.1
M2_78
15.8
M2_79
15.8
M2_80
15.7
M2_81
15.7
M2_82
15.6
M2_83
15.5
M2_84
14.9
M2_85
14.8
M2_86
14.5
M2_87
14.2
M2_88
14.0
M2_89
13.6
M2_90
12.8
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