A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.3
nTPM
Monaco:
11.0
nTPM
Schmiedel:
43.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.3
HPA sample
nTPM
Classical monocyte nTPM: 1.7
Samples: 6
Max nTPM: 2.2
Min nTPM: 1.3
P10809_1003
1.3
P10809_1020
1.8
P10809_1039
1.7
P10809_1058
1.6
P10809_1080
2.2
P10809_1107
1.5
Intermediate monocyte nTPM: 3.3
Samples: 6
Max nTPM: 4.6
Min nTPM: 2.1
P10809_1004
3.7
P10809_1023
2.1
P10809_1042
3.6
P10809_1061
4.6
P10809_1081
2.9
P10809_1108
2.7
Non-classical monocyte nTPM: 3.3
Samples: 5
Max nTPM: 5.9
Min nTPM: 2.0
P10809_1005
4.0
P10809_1053
2.0
P10809_1072
2.2
P10809_1082
5.9
P10809_1109
2.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.0
Monaco sample
nTPM
Classical monocyte nTPM: 6.0
Samples: 4
Max nTPM: 7.1
Min nTPM: 4.2
RHH5313_R3680
4.2
RHH5221_R3593
6.7
RHH5250_R3622
6.0
RHH5279_R3651
7.1
Intermediate monocyte nTPM: 7.6
Samples: 4
Max nTPM: 9.8
Min nTPM: 4.7
RHH5314_R3681
9.1
RHH5222_R3594
4.7
RHH5251_R3623
6.6
RHH5280_R3652
9.8
Non-classical monocyte nTPM: 11.0
Samples: 4
Max nTPM: 15.6
Min nTPM: 9.2
RHH5315_R3682
15.6
RHH5223_R3595
9.4
RHH5252_R3624
9.6
RHH5281_R3653
9.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.5
Schmiedel sample id
TPM
Classical monocyte TPM: 23.7
Samples: 91
Max TPM: 33.2
Min TPM: 11.7
MONOCYTES_1
33.2
MONOCYTES_2
31.7
MONOCYTES_3
31.3
MONOCYTES_4
30.3
MONOCYTES_5
30.3
MONOCYTES_6
29.5
MONOCYTES_7
29.5
MONOCYTES_8
28.9
MONOCYTES_9
28.4
MONOCYTES_10
28.4
MONOCYTES_11
28.3
MONOCYTES_12
27.9
MONOCYTES_13
27.7
MONOCYTES_14
27.3
MONOCYTES_15
27.1
MONOCYTES_16
27.1
MONOCYTES_17
26.8
MONOCYTES_18
26.7
MONOCYTES_19
26.5
MONOCYTES_20
26.5
MONOCYTES_21
26.3
MONOCYTES_22
26.2
MONOCYTES_23
25.9
MONOCYTES_24
25.9
MONOCYTES_25
25.7
MONOCYTES_26
25.7
MONOCYTES_27
25.7
MONOCYTES_28
25.5
MONOCYTES_29
25.3
MONOCYTES_30
25.1
MONOCYTES_31
25.0
MONOCYTES_32
24.8
MONOCYTES_33
24.8
MONOCYTES_34
24.8
MONOCYTES_35
24.8
MONOCYTES_36
24.7
MONOCYTES_37
24.6
MONOCYTES_38
24.4
MONOCYTES_39
24.0
MONOCYTES_40
24.0
MONOCYTES_41
24.0
MONOCYTES_42
23.8
MONOCYTES_43
23.8
MONOCYTES_44
23.6
MONOCYTES_45
23.5
MONOCYTES_46
23.5
MONOCYTES_47
23.5
MONOCYTES_48
23.4
MONOCYTES_49
23.4
MONOCYTES_50
23.4
MONOCYTES_51
23.1
MONOCYTES_52
23.0
MONOCYTES_53
22.8
MONOCYTES_54
22.7
MONOCYTES_55
22.7
MONOCYTES_56
22.6
MONOCYTES_57
22.6
MONOCYTES_58
22.4
MONOCYTES_59
22.3
MONOCYTES_60
22.1
MONOCYTES_61
21.8
MONOCYTES_62
21.8
MONOCYTES_63
21.8
MONOCYTES_64
21.7
MONOCYTES_65
21.5
MONOCYTES_66
21.4
MONOCYTES_67
21.2
MONOCYTES_68
21.2
MONOCYTES_69
21.1
MONOCYTES_70
21.1
MONOCYTES_71
21.1
MONOCYTES_72
20.9
MONOCYTES_73
20.8
MONOCYTES_74
20.7
MONOCYTES_75
20.5
MONOCYTES_76
20.1
MONOCYTES_77
19.9
MONOCYTES_78
19.9
MONOCYTES_79
19.8
MONOCYTES_80
19.5
MONOCYTES_81
19.5
MONOCYTES_82
19.4
MONOCYTES_83
19.4
MONOCYTES_84
19.2
MONOCYTES_85
19.2
MONOCYTES_86
18.9
MONOCYTES_87
18.4
MONOCYTES_88
18.2
MONOCYTES_89
17.7
MONOCYTES_90
16.4
MONOCYTES_91
11.7
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Non-classical monocyte TPM: 43.5
Samples: 90
Max TPM: 70.5
Min TPM: 28.4
M2_1
70.5
M2_2
68.8
M2_3
67.0
M2_4
61.6
M2_5
60.7
M2_6
58.3
M2_7
57.8
M2_8
56.0
M2_9
55.7
M2_10
55.1
M2_11
55.0
M2_12
54.5
M2_13
53.8
M2_14
53.7
M2_15
53.3
M2_16
51.0
M2_17
51.0
M2_18
50.6
M2_19
49.1
M2_20
48.7
M2_21
48.2
M2_22
48.0
M2_23
47.4
M2_24
47.3
M2_25
47.2
M2_26
47.0
M2_27
46.3
M2_28
46.0
M2_29
45.9
M2_30
45.9
M2_31
44.9
M2_32
44.8
M2_33
44.6
M2_34
44.4
M2_35
44.1
M2_36
44.1
M2_37
43.9
M2_38
43.9
M2_39
43.8
M2_40
43.7
M2_41
43.6
M2_42
43.3
M2_43
43.1
M2_44
42.8
M2_45
42.7
M2_46
42.5
M2_47
41.9
M2_48
41.8
M2_49
41.5
M2_50
41.1
M2_51
41.1
M2_52
40.8
M2_53
40.4
M2_54
40.3
M2_55
40.2
M2_56
40.0
M2_57
40.0
M2_58
39.8
M2_59
39.8
M2_60
39.8
M2_61
39.4
M2_62
39.3
M2_63
38.7
M2_64
38.6
M2_65
38.5
M2_66
38.3
M2_67
38.0
M2_68
37.9
M2_69
37.9
M2_70
36.0
M2_71
35.2
M2_72
35.1
M2_73
35.1
M2_74
35.0
M2_75
34.9
M2_76
34.8
M2_77
34.7
M2_78
34.6
M2_79
34.5
M2_80
33.9
M2_81
33.2
M2_82
33.0
M2_83
32.9
M2_84
32.7
M2_85
32.4
M2_86
32.4
M2_87
31.4
M2_88
31.3
M2_89
31.0
M2_90
28.4
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