On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glandular cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA038015
Antibody HPA038483
Antibody CAB031482
Glandular cells
High
Medium
Medium
SMALL INTESTINE - PROTEINTALKS DB MS
Median intensity
ND
Sample
Intensity
Small intestine_01
ND
Small intestine_02
ND
Small intestine_03
ND
Small intestine_04
ND
Small intestine_05
ND
Small intestine_06
ND
Small intestine_07
ND
Small intestine_08
ND
SMALL INTESTINE - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.8
Male, age 65
Small intestine sample 232 nTPM: 1.3
Cell types%
Glandular cells:
55
Smooth muscle cells:
5
Other cell types:
40
Male, age 39
Small intestine sample 233 nTPM: 0.6
Cell types%
Glandular cells:
40
Smooth muscle cells:
5
Other cell types:
55
Male, age 68
Small intestine sample 234 nTPM: 0.8
Cell types%
Glandular cells:
30
Smooth muscle cells:
15
Other cell types:
55
Male, age 85
Small intestine sample 235 nTPM: 0.4
SMALL INTESTINE - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.0
GTEx sample id
Sample description
nTPM
Small Intestine - Terminal Ileum Average nTPM: 1.0
Samples: 207
Max nTPM: 5.7
Min nTPM: 0.1
Std nTPM: 1.1
Median nTPM: 0.5
GTEX-1I1GT-1826-SM-ARZLW
60-69 years, female
5.7
GTEX-1LH75-1926-SM-DIPGD
50-59 years, female
5.7
GTEX-11LCK-1926-SM-5A5KE
30-39 years, male
5.5
GTEX-1OKEX-1126-SM-DTXEB
60-69 years, male
5.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
4.9
GTEX-17KNJ-1626-SM-718AL
50-59 years, male
4.3
GTEX-ZPU1-1826-SM-GNTB3
40-49 years, male
4.3
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
4.3
GTEX-13NYB-1826-SM-5J1N3
40-49 years, male
4.1
GTEX-YB5K-1126-SM-H6Q6O
40-49 years, female
4.1
GTEX-XPT6-1026-SM-GOQYN
20-29 years, male
3.8
GTEX-1S82Z-1826-SM-E9TIK
30-39 years, female
3.7
GTEX-ZAB5-1526-SM-5HL9P
50-59 years, male
3.7
GTEX-1QW4Y-1226-SM-EWRMY
30-39 years, male
3.5
GTEX-1R9JW-1926-SM-EVR4J
30-39 years, female
3.5
GTEX-Y3I4-1326-SM-4TT8Z
50-59 years, male
3.3
GTEX-WFON-1526-SM-4LVMP
40-49 years, male
2.9
GTEX-XPVG-1726-SM-4B65W
50-59 years, male
2.9
GTEX-Y5V5-1826-SM-4VDS5
60-69 years, female
2.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
2.8
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
2.8
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
2.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
2.7
GTEX-W5X1-1926-SM-GOQYX
40-49 years, female
2.6
GTEX-Y111-2226-SM-4SOJB
50-59 years, male
2.6
GTEX-1192X-2526-SM-59868
50-59 years, male
2.4
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
2.4
GTEX-178AV-1226-SM-GOR11
40-49 years, male
2.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
2.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
2.3
GTEX-1QCLZ-2126-SM-EWRNC
60-69 years, female
2.0
GTEX-1R9K5-2026-SM-E6CPS
50-59 years, male
2.0
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
2.0
GTEX-WYJK-1526-SM-4ONCW
50-59 years, male
1.9
GTEX-1R9PM-1626-SM-DPRY9
20-29 years, male
1.8
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
1.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
1.8
GTEX-14C39-1826-SM-5ZZW4
40-49 years, male
1.6
GTEX-1R9K4-2326-SM-E6CRB
60-69 years, male
1.6
GTEX-X3Y1-1526-SM-H6Q6X
40-49 years, male
1.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
1.5
GTEX-WHPG-1826-SM-GNTAH
50-59 years, male
1.5
GTEX-1GMR3-2726-SM-7MKFB
40-49 years, male
1.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
1.3
GTEX-1BAJH-2526-SM-7IGOT
70-79 years, male
1.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
1.2
GTEX-17MFQ-1026-SM-7KFSZ
20-29 years, male
1.1
GTEX-1C64O-2526-SM-79ONO
60-69 years, male
1.1
GTEX-1JMQK-2426-SM-CXZJU
60-69 years, male
1.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
1.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
1.0
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
1.0
GTEX-1RAZA-1826-SM-DTXA2
20-29 years, male
1.0
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
1.0
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
1.0
GTEX-14PJ3-1326-SM-664O7
50-59 years, male
0.9
GTEX-15EU6-1826-SM-7PC1W
50-59 years, male
0.9
GTEX-17HHE-1726-SM-79OKT
50-59 years, male
0.9
GTEX-1B8KZ-1126-SM-7IGLX
50-59 years, male
0.9
GTEX-1LGOU-1426-SM-D3L8N
20-29 years, female
0.9
GTEX-1NSGN-2126-SM-DPRYN
50-59 years, male
0.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
0.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
0.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
0.8
GTEX-1497J-1926-SM-5TDCC
60-69 years, male
0.8
GTEX-14PKU-1626-SM-6871C
40-49 years, female
0.8
GTEX-14PN3-2026-SM-68729
60-69 years, female
0.8
GTEX-1PFEY-1326-SM-HK791
30-39 years, male
0.8
GTEX-1S5ZA-1326-SM-EV7BB
20-29 years, male
0.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
0.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
0.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
0.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
0.7
GTEX-16AAH-1426-SM-7KFTR
50-59 years, male
0.7
GTEX-1MUQO-2426-SM-EAZ5A
60-69 years, male
0.7
GTEX-1RAZR-1826-SM-E6CRE
40-49 years, male
0.7
GTEX-1RQED-2826-SM-HLJQK
60-69 years, male
0.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
0.7
GTEX-YJ8A-2126-SM-GQ1C7
20-29 years, male
0.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
0.7
GTEX-1CAMS-2426-SM-7DHMV
40-49 years, female
0.6
GTEX-1EMGI-2826-SM-7IGMR
60-69 years, male
0.6
GTEX-1IKOE-1926-SM-ARU7V
30-39 years, female
0.6
GTEX-1JJE9-2226-SM-CXZJM
70-79 years, male
0.6
GTEX-1L5NE-1826-SM-EV79T
50-59 years, male
0.6
GTEX-1M5QR-2226-SM-HLJRV
40-49 years, male
0.6
GTEX-1R7EV-1226-SM-DTX82
40-49 years, male
0.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
0.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
0.6
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
0.5
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
0.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
0.5
GTEX-15DZA-0826-SM-6AJBF
30-39 years, female
0.5
GTEX-18A66-2526-SM-7KFTZ
60-69 years, male
0.5
GTEX-18QFQ-1626-SM-72D7H
30-39 years, male
0.5
GTEX-1C475-1426-SM-793CH
40-49 years, female
0.5
GTEX-1H1DE-1426-SM-9JGHV
20-29 years, male
0.5
GTEX-1NHNU-2526-SM-HK79M
50-59 years, male
0.5
GTEX-1OJC3-1626-SM-E9U65
20-29 years, male
0.5
GTEX-1PDJ9-1826-SM-E9U66
20-29 years, male
0.5
GTEX-1QP28-1726-SM-E6CRK
50-59 years, female
0.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
0.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
0.5
GTEX-ZF29-1626-SM-4WKFJ
60-69 years, female
0.5
GTEX-ZG7Y-1926-SM-DNZZ5
50-59 years, male
0.5
GTEX-ZT9X-1026-SM-HLJS2
40-49 years, male
0.5
GTEX-ZV7C-1426-SM-GNTB8
50-59 years, male
0.5
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
0.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
0.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
0.4
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
0.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
0.4
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
0.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
0.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
0.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
0.4
GTEX-14PK6-1626-SM-6871I
70-79 years, female
0.4
GTEX-15G1A-1726-SM-6LPI4
30-39 years, male
0.4
GTEX-16MTA-1526-SM-6LPJB
50-59 years, male
0.4
GTEX-183FY-1626-SM-793D8
20-29 years, male
0.4
GTEX-1B8KE-1726-SM-7IGMN
50-59 years, male
0.4
GTEX-1F75I-2526-SM-9WPOZ
40-49 years, male
0.4
GTEX-1GMR2-1026-SM-7MKHJ
50-59 years, male
0.4
GTEX-1H11D-2526-SM-9JGGU
40-49 years, male
0.4
GTEX-1HSMQ-2226-SM-C1YRD
50-59 years, male
0.4
GTEX-1JK1U-1226-SM-CNNPN
60-69 years, male
0.4
GTEX-1K9T9-2726-SM-D4P3E
50-59 years, female
0.4
GTEX-1MA7W-0726-SM-HLJQU
20-29 years, female
0.4
GTEX-1MGNQ-2326-SM-EV7BG
40-49 years, male
0.4
GTEX-1PIEJ-1526-SM-E6CP8
20-29 years, female
0.4
GTEX-1QP2A-2426-SM-EXOJA
50-59 years, male
0.4
GTEX-1R7EU-1326-SM-E6CQ6
60-69 years, male
0.4
GTEX-1RAZQ-2226-SM-DPRZR
30-39 years, male
0.4
GTEX-U8XE-2226-SM-HAUZQ
30-39 years, male
0.4
GTEX-WY7C-1826-SM-4ONCE
50-59 years, male
0.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
0.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
0.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
0.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
0.4
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
0.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
0.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
0.4
GTEX-ZLWG-1626-SM-DNZZ1
50-59 years, female
0.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
0.3
GTEX-1122O-1326-SM-5H11F
60-69 years, female
0.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
0.3
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
0.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
0.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
0.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
0.3
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
0.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
0.3
GTEX-13X6H-1826-SM-5O9D1
50-59 years, female
0.3
GTEX-144GM-1026-SM-5O9AZ
20-29 years, male
0.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
0.3
GTEX-14PJ6-1726-SM-6AJBN
60-69 years, female
0.3
GTEX-14PJN-0826-SM-686ZL
30-39 years, male
0.3
GTEX-14PKV-2026-SM-6AJ9A
20-29 years, female
0.3
GTEX-16A39-1426-SM-6LLI6
30-39 years, female
0.3
GTEX-1AMFI-1926-SM-731F2
50-59 years, female
0.3
GTEX-1HCUA-1726-SM-GA8Z2
50-59 years, female
0.3
GTEX-1HSGN-2126-SM-GA8ZB
40-49 years, female
0.3
GTEX-1J8Q3-2526-SM-CNNQ4
60-69 years, male
0.3
GTEX-1J8QM-1026-SM-C1YQA
60-69 years, female
0.3
GTEX-1JN76-1126-SM-C1YRL
20-29 years, female
0.3
GTEX-1MCYP-1626-SM-HLJQ5
20-29 years, female
0.3
GTEX-1QPFJ-2626-SM-DPRZU
30-39 years, female
0.3
GTEX-1S831-1526-SM-HLJQS
20-29 years, male
0.3
GTEX-X4LF-1326-SM-HLJSD
50-59 years, male
0.3
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
0.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
0.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
0.3
GTEX-YFCO-1326-SM-664NV
40-49 years, male
0.3
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
0.3
GTEX-ZDTT-1726-SM-5HL69
60-69 years, male
0.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
0.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
0.3
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
0.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
0.2
GTEX-11TUW-1926-SM-5BC58
60-69 years, male
0.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
0.2
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
0.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
0.2
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
0.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
0.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
0.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
0.2
GTEX-14BMU-1426-SM-5TDE5
20-29 years, female
0.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
0.2
GTEX-14XAO-1926-SM-6ETZO
60-69 years, female
0.2
GTEX-16NGA-1126-SM-7KFSY
40-49 years, female
0.2
GTEX-1AX8Z-2526-SM-731E3
60-69 years, male
0.2
GTEX-1GL5R-2026-SM-7MKHP
50-59 years, male
0.2
GTEX-1HBPN-1926-SM-GA91H
50-59 years, male
0.2
GTEX-1HKZK-2226-SM-GA91V
40-49 years, male
0.2
GTEX-1LBAC-1526-SM-CXZKU
20-29 years, male
0.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
0.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
0.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
0.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
0.2
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
0.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
0.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
0.2
GTEX-1CAMR-0826-SM-7MKFK
20-29 years, male
0.1
GTEX-1KXAM-2026-SM-DHXKI
60-69 years, male
0.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
0.1
GTEX-WHSB-1026-SM-4M1XN
50-59 years, male
0.1
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SMALL INTESTINE - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
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The Human Protein Atlas project is funded
