HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.8 nTPM
HPA Brain:57.2 nTPM
GTEx:79.8 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:107.2 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 57.2
Sample id Sample description nTPM
Hippocampus
nTPM: 43.4
2529 Female, age 94, left hemisphere 59.6
1898 Male, age 80, left hemisphere 48.4
1911 Female, age 85, right hemisphere 43.6
2621 Female, age 67, right hemisphere 40.8
1855 Male, age 76, left hemisphere 38.2
2148 Female, age 91, left hemisphere 29.9
Dentate gyrus
nTPM: 41.3
2530 Female, age 94, left hemisphere 65.0
2531 Female, age 67, both hemispheres 45.9
2528 Male, age 74, both hemispheres 41.1
1927 Female, age 91, both hemispheres 35.6
2010 Male, age 76, both hemispheres 33.9
2246 Female, age 85, both hemispheres 26.2
Entorhinal gyrus
nTPM: 30.1
2686 Male, age 75, right hemisphere 44.7
2117 Female, age 91, right hemisphere 39.7
1938 Female, age 85, left hemisphere 29.6
2764 Male, age 80, right hemisphere 23.5
1787 Male, age 76, left hemisphere 21.9
2613 Female, age 94, left hemisphere 21.2
Hippocampus, CA1
nTPM: 40.1
2527 Male, age 74, both hemispheres 50.7
2082 Female, age 91, right hemisphere 45.8
1873 Female, age 85, both hemispheres 38.3
2749 Male, age 80, left hemisphere 37.1
2045 Male, age 76, both hemispheres 28.4
Hippocampus, CA2
nTPM: 57.2
2437 Female, age 94, left hemisphere 82.9
2249 Male, age 74, both hemispheres 69.1
2113 Female, age 91, right hemisphere 58.4
1963 Male, age 80, left hemisphere 52.0
1940 Female, age 85, left hemisphere 43.7
1892 Male, age 76, both hemispheres 37.3
Hippocampus, CA3
nTPM: 41.7
2861 Female, age 67, both hemispheres 69.4
1867 Male, age 76, both hemispheres 56.3
1891 Female, age 85, both hemispheres 40.4
2436 Male, age 74, both hemispheres 39.3
2137 Male, age 80, left hemisphere 25.3
2620 Female, age 94, left hemisphere 19.6
Parahippocampal cortex
nTPM: 32.8
2245 Female, age 91, both hemispheres 40.0
2250 Female, age 67, right hemisphere 39.6
1850 Male, age 80, both hemispheres 35.0
2693 Female, age 94, both hemispheres 35.0
2018 Male, age 76, both hemispheres 34.1
2532 Female, age 72, left hemisphere 33.7
1990 Female, age 91, right hemisphere 31.7
2692 Male, age 74, both hemispheres 29.5
1933 Female, age 85, both hemispheres 28.7
2622 Female, age 67, right hemisphere 20.7
Perirhinal gyrus
nTPM: 27.1
1841 Female, age 85, right hemisphere 34.9
2521 Female, age 94, right hemisphere 28.6
1847 Female, age 91, left hemisphere 26.6
1794 Male, age 80, right hemisphere 25.7
2848 Male, age 76, right hemisphere 19.7
Subiculum
nTPM: 35.9
2438 Female, age 94, left hemisphere 56.7
1901 Male, age 80, both hemispheres 40.5
2042 Male, age 76, both hemispheres 35.0
2729 Female, age 91, right hemisphere 30.4
1977 Female, age 85, both hemispheres 26.5
2619 Male, age 74, both hemispheres 26.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 79.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 79.8
Samples: 255

Max nTPM: 369.8
Min nTPM: 12.6
Std nTPM: 56.3
Median nTPM: 62.0
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 369.8
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 368.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 318.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 287.2
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 262.2
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 252.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 242.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 227.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 212.9
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 210.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 202.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 61.1
FF:10153-102I9 76 years, female 61.9
FF:10169-103B7 60 years, female 60.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 28.1
Pig sample Sample description nTPM
Subiculum
nTPM: 23.3
Samples: 4

Max nTPM: 25.8
Min nTPM: 19.0
Sample A Female 25.8
Sample B Female 19.0
Sample C Male 24.2
Sample D Male 24.3
Dorsal hippocampus
nTPM: 19.8
Samples: 4

Max nTPM: 21.2
Min nTPM: 18.6
Sample A Female 19.2
Sample B Female 21.2
Sample C Male 20.0
Sample D Male 18.6
Entorhinal cortex
nTPM: 23.4
Samples: 4

Max nTPM: 28.7
Min nTPM: 19.9
Sample A Female 20.2
Sample B Female 24.9
Sample C Male 28.7
Sample D Male 19.9
Ventral hippocampus
nTPM: 28.1
Samples: 4

Max nTPM: 34.9
Min nTPM: 18.2
Sample A Female 34.9
Sample B Female 25.0
Sample C Male 34.2
Sample D Male 18.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 107.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 107.2
Samples: 4

Max nTPM: 115.3
Min nTPM: 102.0
Sample A Male 108.0
Sample B Male 103.5
Sample C Female 115.3
Sample D Female 102.0
Hippocampal formation
nTPM: 89.8
Samples: 4

Max nTPM: 101.5
Min nTPM: 79.8
Sample A Male 101.5
Sample B Male 82.8
Sample C Female 79.8
Sample D Female 95.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
74881146 Antisense, RP_060220_01_A04, Mouse strain C57BL/6J (56 days, male) 1.6
69549248 Antisense, RP_050125_01_C03, Mouse strain C57BL/6J (56 days, male) 0.6

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