A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
130.9
nTPM
Monaco:
117.8
nTPM
Schmiedel:
102.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
130.9
HPA sample
nTPM
NK-cell nTPM: 130.9
Samples: 6
Max nTPM: 212.3
Min nTPM: 62.9
P10809_1013
84.7
P10809_1033
62.9
P10809_1052
98.3
P10809_1071
148.5
P10809_1093
212.3
P10809_1103
178.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.8
Monaco sample
nTPM
NK-cell nTPM: 117.8
Samples: 4
Max nTPM: 191.4
Min nTPM: 54.3
RHH5316_R3683
125.6
RHH5224_R3596
54.3
RHH5253_R3625
99.7
RHH5282_R3654
191.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.9
Schmiedel sample id
TPM
NK-cell TPM: 102.9
Samples: 90
Max TPM: 235.3
Min TPM: 34.1
NK_1
235.3
NK_2
200.2
NK_3
193.6
NK_4
185.2
NK_5
175.4
NK_6
172.3
NK_7
165.1
NK_8
164.3
NK_9
154.2
NK_10
151.1
NK_11
150.1
NK_12
147.5
NK_13
146.7
NK_14
142.2
NK_15
141.7
NK_16
141.4
NK_17
139.0
NK_18
132.2
NK_19
130.5
NK_20
124.3
NK_21
123.8
NK_22
123.2
NK_23
122.8
NK_24
122.6
NK_25
122.5
NK_26
121.4
NK_27
120.1
NK_28
119.0
NK_29
116.8
NK_30
116.3
NK_31
115.8
NK_32
115.8
NK_33
114.4
NK_34
114.3
NK_35
113.1
NK_36
111.6
NK_37
110.8
NK_38
110.4
NK_39
109.4
NK_40
109.3
NK_41
107.8
NK_42
107.3
NK_43
107.0
NK_44
107.0
NK_45
106.2
NK_46
105.8
NK_47
105.5
NK_48
103.5
NK_49
102.7
NK_50
100.5
NK_51
98.5
NK_52
98.3
NK_53
97.4
NK_54
96.3
NK_55
95.9
NK_56
92.7
NK_57
91.5
NK_58
89.7
NK_59
85.3
NK_60
84.0
NK_61
83.2
NK_62
82.9
NK_63
79.4
NK_64
78.0
NK_65
77.8
NK_66
73.8
NK_67
69.4
NK_68
68.1
NK_69
68.0
NK_70
65.4
NK_71
63.8
NK_72
63.2
NK_73
61.9
NK_74
61.5
NK_75
59.5
NK_76
56.6
NK_77
56.3
NK_78
52.3
NK_79
52.2
NK_80
52.1
NK_81
50.6
NK_82
49.4
NK_83
47.4
NK_84
47.2
NK_85
45.7
NK_86
41.5
NK_87
39.0
NK_88
38.7
NK_89
36.1
NK_90
34.1
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