A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
127.1
nTPM
Monaco:
104.7
nTPM
Schmiedel:
20.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.1
HPA sample
nTPM
Classical monocyte nTPM: 127.1
Samples: 6
Max nTPM: 153.2
Min nTPM: 111.4
P10809_1003
111.4
P10809_1020
121.8
P10809_1039
139.4
P10809_1058
112.2
P10809_1080
124.7
P10809_1107
153.2
Intermediate monocyte nTPM: 114.3
Samples: 6
Max nTPM: 137.1
Min nTPM: 86.5
P10809_1004
87.0
P10809_1023
118.2
P10809_1042
137.1
P10809_1061
123.1
P10809_1081
86.5
P10809_1108
134.0
Non-classical monocyte nTPM: 109.3
Samples: 5
Max nTPM: 137.8
Min nTPM: 77.0
P10809_1005
122.1
P10809_1053
113.4
P10809_1072
77.0
P10809_1082
96.3
P10809_1109
137.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.7
Monaco sample
nTPM
Classical monocyte nTPM: 104.7
Samples: 4
Max nTPM: 138.2
Min nTPM: 90.0
RHH5313_R3680
138.2
RHH5221_R3593
94.9
RHH5250_R3622
90.0
RHH5279_R3651
95.6
Intermediate monocyte nTPM: 85.7
Samples: 4
Max nTPM: 108.1
Min nTPM: 68.6
RHH5314_R3681
108.1
RHH5222_R3594
72.7
RHH5251_R3623
68.6
RHH5280_R3652
93.5
Non-classical monocyte nTPM: 101.3
Samples: 4
Max nTPM: 118.5
Min nTPM: 88.9
RHH5315_R3682
118.5
RHH5223_R3595
93.9
RHH5252_R3624
88.9
RHH5281_R3653
103.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.7
Schmiedel sample id
TPM
Classical monocyte TPM: 17.7
Samples: 91
Max TPM: 31.1
Min TPM: 8.3
MONOCYTES_1
31.1
MONOCYTES_2
30.2
MONOCYTES_3
30.1
MONOCYTES_4
29.4
MONOCYTES_5
27.9
MONOCYTES_6
27.2
MONOCYTES_7
26.9
MONOCYTES_8
25.4
MONOCYTES_9
24.0
MONOCYTES_10
23.8
MONOCYTES_11
23.5
MONOCYTES_12
23.3
MONOCYTES_13
23.3
MONOCYTES_14
22.9
MONOCYTES_15
22.7
MONOCYTES_16
22.6
MONOCYTES_17
22.4
MONOCYTES_18
22.3
MONOCYTES_19
22.2
MONOCYTES_20
22.1
MONOCYTES_21
22.0
MONOCYTES_22
21.9
MONOCYTES_23
21.8
MONOCYTES_24
21.8
MONOCYTES_25
21.8
MONOCYTES_26
21.4
MONOCYTES_27
21.3
MONOCYTES_28
20.9
MONOCYTES_29
20.5
MONOCYTES_30
20.2
MONOCYTES_31
19.5
MONOCYTES_32
19.4
MONOCYTES_33
19.3
MONOCYTES_34
19.1
MONOCYTES_35
18.9
MONOCYTES_36
18.5
MONOCYTES_37
18.4
MONOCYTES_38
18.4
MONOCYTES_39
18.2
MONOCYTES_40
18.0
MONOCYTES_41
17.8
MONOCYTES_42
17.2
MONOCYTES_43
17.1
MONOCYTES_44
17.1
MONOCYTES_45
17.1
MONOCYTES_46
17.1
MONOCYTES_47
16.7
MONOCYTES_48
16.6
MONOCYTES_49
16.4
MONOCYTES_50
16.0
MONOCYTES_51
15.6
MONOCYTES_52
15.6
MONOCYTES_53
15.5
MONOCYTES_54
15.5
MONOCYTES_55
15.4
MONOCYTES_56
15.4
MONOCYTES_57
15.3
MONOCYTES_58
15.3
MONOCYTES_59
14.8
MONOCYTES_60
14.8
MONOCYTES_61
14.7
MONOCYTES_62
14.6
MONOCYTES_63
14.6
MONOCYTES_64
14.5
MONOCYTES_65
14.5
MONOCYTES_66
14.5
MONOCYTES_67
14.4
MONOCYTES_68
14.3
MONOCYTES_69
13.8
MONOCYTES_70
13.7
MONOCYTES_71
13.6
MONOCYTES_72
13.6
MONOCYTES_73
13.3
MONOCYTES_74
13.2
MONOCYTES_75
13.1
MONOCYTES_76
12.9
MONOCYTES_77
12.7
MONOCYTES_78
12.4
MONOCYTES_79
12.4
MONOCYTES_80
12.2
MONOCYTES_81
12.2
MONOCYTES_82
11.3
MONOCYTES_83
11.2
MONOCYTES_84
10.9
MONOCYTES_85
10.7
MONOCYTES_86
10.3
MONOCYTES_87
10.3
MONOCYTES_88
10.2
MONOCYTES_89
9.8
MONOCYTES_90
8.8
MONOCYTES_91
8.3
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Non-classical monocyte TPM: 20.7
Samples: 90
Max TPM: 39.9
Min TPM: 9.4
M2_1
39.9
M2_2
38.4
M2_3
37.4
M2_4
36.5
M2_5
35.7
M2_6
31.4
M2_7
30.6
M2_8
30.6
M2_9
30.1
M2_10
29.6
M2_11
28.9
M2_12
28.4
M2_13
28.3
M2_14
28.0
M2_15
27.7
M2_16
27.7
M2_17
27.3
M2_18
26.5
M2_19
25.8
M2_20
25.6
M2_21
25.4
M2_22
24.5
M2_23
24.4
M2_24
24.2
M2_25
24.1
M2_26
23.4
M2_27
23.3
M2_28
23.3
M2_29
23.0
M2_30
23.0
M2_31
22.8
M2_32
22.7
M2_33
22.7
M2_34
22.6
M2_35
22.4
M2_36
21.8
M2_37
21.8
M2_38
21.3
M2_39
21.2
M2_40
21.0
M2_41
20.7
M2_42
20.6
M2_43
20.6
M2_44
20.5
M2_45
20.4
M2_46
20.4
M2_47
19.7
M2_48
19.6
M2_49
19.6
M2_50
19.6
M2_51
19.5
M2_52
18.8
M2_53
18.8
M2_54
18.3
M2_55
18.3
M2_56
17.9
M2_57
17.9
M2_58
17.9
M2_59
17.8
M2_60
17.5
M2_61
16.9
M2_62
16.4
M2_63
16.3
M2_64
16.1
M2_65
16.0
M2_66
15.9
M2_67
15.6
M2_68
15.1
M2_69
14.9
M2_70
14.8
M2_71
14.8
M2_72
14.7
M2_73
14.2
M2_74
13.8
M2_75
13.7
M2_76
13.5
M2_77
13.4
M2_78
13.2
M2_79
12.9
M2_80
12.9
M2_81
12.8
M2_82
12.7
M2_83
12.3
M2_84
12.0
M2_85
11.8
M2_86
11.3
M2_87
10.9
M2_88
10.5
M2_89
9.7
M2_90
9.4
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