A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.8
nTPM
Monaco:
30.5
nTPM
Schmiedel:
9.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.8
HPA sample
nTPM
Classical monocyte nTPM: 14.5
Samples: 6
Max nTPM: 23.8
Min nTPM: 6.0
P10809_1003
6.0
P10809_1020
15.6
P10809_1039
23.8
P10809_1058
10.0
P10809_1080
15.2
P10809_1107
16.3
Intermediate monocyte nTPM: 23.8
Samples: 6
Max nTPM: 30.8
Min nTPM: 16.5
P10809_1004
26.9
P10809_1023
22.1
P10809_1042
20.0
P10809_1061
26.6
P10809_1081
16.5
P10809_1108
30.8
Non-classical monocyte nTPM: 28.8
Samples: 5
Max nTPM: 48.9
Min nTPM: 20.7
P10809_1005
20.7
P10809_1053
23.0
P10809_1072
48.9
P10809_1082
20.7
P10809_1109
30.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.5
Monaco sample
nTPM
Classical monocyte nTPM: 21.3
Samples: 4
Max nTPM: 23.5
Min nTPM: 19.8
RHH5313_R3680
21.7
RHH5221_R3593
20.4
RHH5250_R3622
23.5
RHH5279_R3651
19.8
Intermediate monocyte nTPM: 26.9
Samples: 4
Max nTPM: 31.7
Min nTPM: 23.4
RHH5314_R3681
31.7
RHH5222_R3594
28.3
RHH5251_R3623
24.2
RHH5280_R3652
23.4
Non-classical monocyte nTPM: 30.5
Samples: 4
Max nTPM: 30.8
Min nTPM: 30.1
RHH5315_R3682
30.6
RHH5223_R3595
30.8
RHH5252_R3624
30.6
RHH5281_R3653
30.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.7
Schmiedel sample id
TPM
Classical monocyte TPM: 5.7
Samples: 91
Max TPM: 7.1
Min TPM: 3.9
MONOCYTES_1
7.1
MONOCYTES_2
6.9
MONOCYTES_3
6.8
MONOCYTES_4
6.8
MONOCYTES_5
6.7
MONOCYTES_6
6.7
MONOCYTES_7
6.7
MONOCYTES_8
6.6
MONOCYTES_9
6.5
MONOCYTES_10
6.5
MONOCYTES_11
6.5
MONOCYTES_12
6.5
MONOCYTES_13
6.5
MONOCYTES_14
6.4
MONOCYTES_15
6.4
MONOCYTES_16
6.4
MONOCYTES_17
6.3
MONOCYTES_18
6.3
MONOCYTES_19
6.3
MONOCYTES_20
6.3
MONOCYTES_21
6.2
MONOCYTES_22
6.2
MONOCYTES_23
6.2
MONOCYTES_24
6.2
MONOCYTES_25
6.2
MONOCYTES_26
6.2
MONOCYTES_27
6.2
MONOCYTES_28
6.1
MONOCYTES_29
6.1
MONOCYTES_30
6.1
MONOCYTES_31
6.1
MONOCYTES_32
6.0
MONOCYTES_33
6.0
MONOCYTES_34
6.0
MONOCYTES_35
5.9
MONOCYTES_36
5.9
MONOCYTES_37
5.9
MONOCYTES_38
5.9
MONOCYTES_39
5.9
MONOCYTES_40
5.9
MONOCYTES_41
5.8
MONOCYTES_42
5.8
MONOCYTES_43
5.8
MONOCYTES_44
5.8
MONOCYTES_45
5.8
MONOCYTES_46
5.7
MONOCYTES_47
5.7
MONOCYTES_48
5.6
MONOCYTES_49
5.6
MONOCYTES_50
5.6
MONOCYTES_51
5.6
MONOCYTES_52
5.6
MONOCYTES_53
5.6
MONOCYTES_54
5.6
MONOCYTES_55
5.5
MONOCYTES_56
5.5
MONOCYTES_57
5.5
MONOCYTES_58
5.5
MONOCYTES_59
5.4
MONOCYTES_60
5.4
MONOCYTES_61
5.4
MONOCYTES_62
5.4
MONOCYTES_63
5.4
MONOCYTES_64
5.3
MONOCYTES_65
5.3
MONOCYTES_66
5.3
MONOCYTES_67
5.2
MONOCYTES_68
5.2
MONOCYTES_69
5.2
MONOCYTES_70
5.1
MONOCYTES_71
5.1
MONOCYTES_72
5.1
MONOCYTES_73
5.1
MONOCYTES_74
5.0
MONOCYTES_75
5.0
MONOCYTES_76
5.0
MONOCYTES_77
5.0
MONOCYTES_78
4.9
MONOCYTES_79
4.9
MONOCYTES_80
4.9
MONOCYTES_81
4.9
MONOCYTES_82
4.8
MONOCYTES_83
4.8
MONOCYTES_84
4.8
MONOCYTES_85
4.8
MONOCYTES_86
4.8
MONOCYTES_87
4.7
MONOCYTES_88
4.4
MONOCYTES_89
4.4
MONOCYTES_90
4.3
MONOCYTES_91
3.9
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Non-classical monocyte TPM: 9.7
Samples: 90
Max TPM: 14.9
Min TPM: 6.1
M2_1
14.9
M2_2
12.4
M2_3
11.9
M2_4
11.5
M2_5
11.4
M2_6
11.2
M2_7
11.1
M2_8
11.1
M2_9
11.1
M2_10
11.0
M2_11
11.0
M2_12
11.0
M2_13
10.9
M2_14
10.8
M2_15
10.8
M2_16
10.7
M2_17
10.7
M2_18
10.6
M2_19
10.6
M2_20
10.6
M2_21
10.5
M2_22
10.5
M2_23
10.5
M2_24
10.4
M2_25
10.4
M2_26
10.4
M2_27
10.4
M2_28
10.4
M2_29
10.3
M2_30
10.3
M2_31
10.3
M2_32
10.3
M2_33
10.3
M2_34
10.2
M2_35
10.2
M2_36
10.0
M2_37
10.0
M2_38
10.0
M2_39
9.9
M2_40
9.9
M2_41
9.9
M2_42
9.9
M2_43
9.8
M2_44
9.8
M2_45
9.7
M2_46
9.6
M2_47
9.6
M2_48
9.6
M2_49
9.6
M2_50
9.5
M2_51
9.5
M2_52
9.5
M2_53
9.5
M2_54
9.4
M2_55
9.4
M2_56
9.4
M2_57
9.3
M2_58
9.3
M2_59
9.3
M2_60
9.2
M2_61
9.1
M2_62
9.1
M2_63
9.1
M2_64
9.1
M2_65
9.1
M2_66
9.1
M2_67
9.0
M2_68
9.0
M2_69
9.0
M2_70
9.0
M2_71
8.9
M2_72
8.9
M2_73
8.9
M2_74
8.7
M2_75
8.7
M2_76
8.6
M2_77
8.5
M2_78
8.5
M2_79
8.4
M2_80
8.4
M2_81
8.3
M2_82
8.2
M2_83
8.0
M2_84
7.6
M2_85
7.5
M2_86
7.4
M2_87
7.4
M2_88
7.3
M2_89
7.2
M2_90
6.1
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