A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.4
nTPM
Monaco:
21.2
nTPM
Schmiedel:
57.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.4
HPA sample
nTPM
Memory B-cell nTPM: 13.4
Samples: 6
Max nTPM: 27.0
Min nTPM: 9.0
P10809_1017
10.2
P10809_1025
11.8
P10809_1044
27.0
P10809_1063
12.7
P10809_1092
9.0
P10809_1105
9.6
Naive B-cell nTPM: 11.6
Samples: 6
Max nTPM: 29.0
Min nTPM: 5.4
P10809_1011
8.7
P10809_1029
8.1
P10809_1048
29.0
P10809_1067
5.4
P10809_1091
8.3
P10809_1104
10.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 8.8
Samples: 4
Max nTPM: 14.6
Min nTPM: 5.5
RHH5310_R3677
8.3
RHH5218_R3590
6.8
RHH5247_R3619
14.6
RHH5276_R3648
5.5
Naive B-cell nTPM: 13.4
Samples: 4
Max nTPM: 21.7
Min nTPM: 4.1
RHH5308_R3675
4.1
RHH5216_R3588
21.7
RHH5245_R3617
9.8
RHH5274_R3646
18.0
Non-switched memory B-cell nTPM: 14.0
Samples: 4
Max nTPM: 18.8
Min nTPM: 10.7
RHH5309_R3676
10.7
RHH5217_R3589
13.8
RHH5246_R3618
18.8
RHH5275_R3647
12.7
Plasmablast nTPM: 21.2
Samples: 4
Max nTPM: 32.0
Min nTPM: 14.4
RHH5312_R3679
21.6
RHH5220_R3592
32.0
RHH5249_R3621
14.4
RHH5278_R3650
16.7
Switched memory B-cell nTPM: 15.2
Samples: 4
Max nTPM: 25.0
Min nTPM: 2.5
RHH5311_R3678
25.0
RHH5219_R3591
2.5
RHH5248_R3620
23.1
RHH5277_R3649
10.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.2
Schmiedel sample id
TPM
Naive B-cell TPM: 57.2
Samples: 91
Max TPM: 95.0
Min TPM: 40.3
B_CELL_NAIVE_1
95.0
B_CELL_NAIVE_2
88.1
B_CELL_NAIVE_3
82.4
B_CELL_NAIVE_4
79.0
B_CELL_NAIVE_5
78.5
B_CELL_NAIVE_6
78.3
B_CELL_NAIVE_7
70.4
B_CELL_NAIVE_8
69.2
B_CELL_NAIVE_9
68.9
B_CELL_NAIVE_10
68.2
B_CELL_NAIVE_11
67.5
B_CELL_NAIVE_12
67.4
B_CELL_NAIVE_13
67.0
B_CELL_NAIVE_14
66.8
B_CELL_NAIVE_15
66.0
B_CELL_NAIVE_16
64.6
B_CELL_NAIVE_17
64.4
B_CELL_NAIVE_18
64.4
B_CELL_NAIVE_19
64.0
B_CELL_NAIVE_20
63.6
B_CELL_NAIVE_21
61.1
B_CELL_NAIVE_22
60.6
B_CELL_NAIVE_23
60.3
B_CELL_NAIVE_24
60.1
B_CELL_NAIVE_25
59.9
B_CELL_NAIVE_26
59.4
B_CELL_NAIVE_27
59.2
B_CELL_NAIVE_28
58.9
B_CELL_NAIVE_29
58.9
B_CELL_NAIVE_30
58.7
B_CELL_NAIVE_31
58.7
B_CELL_NAIVE_32
58.4
B_CELL_NAIVE_33
58.4
B_CELL_NAIVE_34
57.9
B_CELL_NAIVE_35
57.5
B_CELL_NAIVE_36
57.4
B_CELL_NAIVE_37
57.3
B_CELL_NAIVE_38
56.9
B_CELL_NAIVE_39
56.9
B_CELL_NAIVE_40
56.8
B_CELL_NAIVE_41
56.5
B_CELL_NAIVE_42
56.1
B_CELL_NAIVE_43
56.0
B_CELL_NAIVE_44
55.9
B_CELL_NAIVE_45
55.8
B_CELL_NAIVE_46
55.8
B_CELL_NAIVE_47
55.5
B_CELL_NAIVE_48
55.4
B_CELL_NAIVE_49
55.3
B_CELL_NAIVE_50
55.2
B_CELL_NAIVE_51
55.2
B_CELL_NAIVE_52
55.2
B_CELL_NAIVE_53
55.1
B_CELL_NAIVE_54
55.0
B_CELL_NAIVE_55
55.0
B_CELL_NAIVE_56
54.9
B_CELL_NAIVE_57
54.4
B_CELL_NAIVE_58
53.5
B_CELL_NAIVE_59
53.0
B_CELL_NAIVE_60
52.9
B_CELL_NAIVE_61
52.6
B_CELL_NAIVE_62
52.5
B_CELL_NAIVE_63
52.1
B_CELL_NAIVE_64
51.7
B_CELL_NAIVE_65
51.3
B_CELL_NAIVE_66
51.2
B_CELL_NAIVE_67
51.1
B_CELL_NAIVE_68
51.0
B_CELL_NAIVE_69
51.0
B_CELL_NAIVE_70
51.0
B_CELL_NAIVE_71
50.9
B_CELL_NAIVE_72
50.6
B_CELL_NAIVE_73
50.4
B_CELL_NAIVE_74
50.4
B_CELL_NAIVE_75
50.4
B_CELL_NAIVE_76
49.9
B_CELL_NAIVE_77
49.5
B_CELL_NAIVE_78
49.0
B_CELL_NAIVE_79
48.3
B_CELL_NAIVE_80
48.1
B_CELL_NAIVE_81
46.7
B_CELL_NAIVE_82
46.1
B_CELL_NAIVE_83
45.7
B_CELL_NAIVE_84
44.4
B_CELL_NAIVE_85
44.2
B_CELL_NAIVE_86
44.0
B_CELL_NAIVE_87
43.2
B_CELL_NAIVE_88
42.3
B_CELL_NAIVE_89
41.7
B_CELL_NAIVE_90
41.4
B_CELL_NAIVE_91
40.3
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