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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
280.5
Sample id
Sample description
nTPM
Amygdala nTPM: 280.5
2514
Male, age 75, right hemisphere
431.1
1987
Female, age 91, left hemisphere
338.3
2517
Female, age 94, left hemisphere
262.0
2814
Male, age 76, right hemisphere
189.7
2695
Female, age 67, right hemisphere
181.2
Basal amygdala nTPM: 217.9
2609
Male, age 75, right hemisphere
328.5
2110
Male, age 80, left hemisphere
286.9
2243
Female, age 91, right hemisphere
257.2
1955
Male, age 76, both hemispheres
203.8
2685
Female, age 94, left hemisphere
160.7
2827
Female, age 67, right hemisphere
70.4
Central amygdala nTPM: 206.1
2239
Male, age 80, left hemisphere
280.7
2515
Male, age 75, right hemisphere
234.5
2701
Female, age 91, right hemisphere
209.5
1905
Male, age 76, both hemispheres
184.3
2826
Female, age 94, left hemisphere
121.4
Corticomedial amygdala nTPM: 269.9
2428
Male, age 75, right hemisphere
375.3
2829
Male, age 80, left hemisphere
315.2
2429
Female, age 94, left hemisphere
300.3
2242
Female, age 91, right hemisphere
291.6
2240
Male, age 76, both hemispheres
218.0
2535
Female, age 67, right hemisphere
118.7
Lateral amygdala nTPM: 195.2
2516
Male, age 75, right hemisphere
303.6
2256
Male, age 80, left hemisphere
259.3
2255
Female, age 91, right hemisphere
232.3
1883
Male, age 76, both hemispheres
195.4
2534
Female, age 94, left hemisphere
118.5
2830
Female, age 67, right hemisphere
62.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
472.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 472.2
Samples: 181
Max nTPM: 1459.1
Min nTPM: 46.4
Std nTPM: 229.7
Median nTPM: 436.4
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
1459.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
1179.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
1087.3
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
1043.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
1018.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
999.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
989.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
954.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
941.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
925.5
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
912.9
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
888.8
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
864.6
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
845.8
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
844.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
788.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
783.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
772.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
753.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
741.5
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
736.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
725.4
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
717.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
694.7
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
691.5
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
687.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
680.1
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
678.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
674.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
673.6
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
666.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
662.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
662.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
657.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
655.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
649.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
647.1
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
640.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
635.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
632.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
629.5
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
628.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
626.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
605.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
595.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
587.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
581.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
580.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
579.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
578.7
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
577.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
576.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
574.8
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
568.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
562.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
561.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
559.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
557.2
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
548.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
542.7
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
537.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
535.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
531.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
510.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
506.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
506.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
502.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
501.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
496.7
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
496.5
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
495.7
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
495.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
489.2
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
488.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
486.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
486.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
485.1
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
482.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
482.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
474.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
470.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
464.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
462.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
460.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
458.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
456.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
454.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
453.3
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
442.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
438.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
436.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
435.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
434.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
434.6
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
432.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
430.0
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
425.2
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
420.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
419.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
417.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
412.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
410.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
393.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
391.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
390.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
385.2
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
383.0
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
380.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
375.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
373.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
372.7
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
369.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
368.8
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
368.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
363.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
358.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
349.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
349.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
345.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
343.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
343.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
335.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
335.8
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
335.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
333.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
329.6
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
325.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
320.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
320.0
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
317.4
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
315.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
314.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
313.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
312.0
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
309.7
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
309.6
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
305.0
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
300.3
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
299.7
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
298.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
297.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
294.8
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
292.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
291.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
288.0
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
287.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
287.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
283.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
276.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
273.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
269.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
269.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
268.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
260.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
255.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
250.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
248.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
243.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
243.3
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
232.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
229.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
229.3
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
223.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
222.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
213.9
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
198.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
196.9
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
185.7
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
180.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
169.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
169.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
167.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
158.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
155.0
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
141.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
127.4
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
122.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
114.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
109.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
106.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
46.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
857.0
Pig sample
Sample description
nTPM
Amygdala nTPM: 857.0
Samples: 4
Max nTPM: 933.2
Min nTPM: 818.1
Sample A
Female
856.2
Sample B
Female
818.1
Sample C
Male
933.2
Sample D
Male
820.5
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
410.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 410.3
Samples: 4
Max nTPM: 441.3
Min nTPM: 362.3
Sample A
Male
362.3
Sample B
Male
403.1
Sample C
Female
434.5
Sample D
Female
441.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
