On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
218.8
nTPM
HPA Brain:
304.1
nTPM
GTEx:
218.8
nTPM
FANTOM5:
592.5
Scaled Tags Per Million
Macaque:
326.1
nTPM
Mouse:
101.2
nTPM
Rat:
136.7
nTPM
Pig:
670.5
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
304.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 151.1
2828
Female, age 72, unknown
214.6
1827
Male, age 72, unknown
190.3
1870
Female, age 42, unknown
186.5
1833
Male, age 53, unknown
164.0
2219
Male, age 76, both hemispheres
153.3
2586
Male, age 75, left hemisphere
145.3
2411
Female, age 72, unknown
143.9
1830
Male, age 51, unknown
115.2
2019
Male, age 18, unknown
112.6
2666
Male, age 74, left hemisphere
85.2
Dorsal raphe nucleus nTPM: 269.2
2298
Female, age 72, unknown
337.8
2016
Female, age 72, unknown
320.5
1828
Male, age 53, unknown
277.6
2047
Male, age 72, unknown
252.5
2750
Male, age 76, both hemispheres
157.8
Inferior colliculus nTPM: 234.6
1848
Female, age 42, unknown
273.9
2849
Male, age 72, unknown
265.4
2097
Female, age 72, unknown
206.6
1890
Male, age 53, unknown
192.5
Median raphe nucleus nTPM: 176.6
2220
Male, age 76, midline
176.6
Periaquaductal grey, anterior nTPM: 228.1
1795
Male, age 51, unknown
263.1
2502
Female, age 75, unknown
212.1
1947
Male, age 18, unknown
209.1
Periaquaductal grey, dorsal nTPM: 304.1
1840
Male, age 53, unknown
441.7
2850
Male, age 76, both hemispheres
345.6
2464
Female, age 72, unknown
240.5
1831
Male, age 72, unknown
188.6
Periaquaductal grey, lateral nTPM: 277.3
2140
Male, age 76, both hemispheres
309.9
2053
Male, age 18, unknown
286.7
2272
Male, age 74, both hemispheres
235.4
Pretectal area nTPM: 238.7
2273
Male, age 74, both hemispheres
378.6
1816
Male, age 51, unknown
312.7
1944
Female, age 72, unknown
287.8
2224
Female, age 72, unknown
275.5
2667
Female, age 75, unknown
264.6
1817
Female, age 42, unknown
228.4
2825
Male, age 18, unknown
210.1
2316
Male, age 76, right hemisphere
206.2
1815
Male, age 53, unknown
184.3
2407
Male, age 75, both hemispheres
144.4
2007
Male, age 72, unknown
133.0
Red nucleus nTPM: 151.7
1954
Female, age 42, unknown
199.5
1821
Female, age 72, unknown
186.8
2503
Female, age 72, unknown
183.8
2725
Female, age 75, unknown
174.5
1904
Male, age 53, unknown
170.8
2823
Male, age 76, right hemisphere
168.5
2769
Male, age 72, unknown
166.5
2227
Male, age 72, unknown
165.9
1865
Male, age 51, unknown
135.5
2588
Male, age 74, left hemisphere
114.5
2785
Male, age 18, unknown
95.2
2584
Male, age 75, left hemisphere
59.2
Substantia nigra nTPM: 235.7
2699
Male, age 18, unknown
386.5
1916
Female, age 42, unknown
336.0
2241
Male, age 72, unknown
264.0
2409
Female, age 72, unknown
256.0
1889
Female, age 72, unknown
237.5
1851
Male, age 51, unknown
218.7
2590
Female, age 75, unknown
210.0
2665
Male, age 74, both hemispheres
187.2
1941
Male, age 53, unknown
130.8
2583
Male, age 75, right hemisphere
130.6
Superior colliculus nTPM: 207.8
2261
Male, age 18, unknown
262.3
2087
Female, age 72, unknown
256.9
1796
Male, age 53, unknown
244.5
1995
Male, age 72, unknown
237.6
1913
Female, age 42, unknown
200.2
2587
Male, age 74, left hemisphere
198.4
1839
Male, age 51, unknown
196.5
2668
Female, age 75, unknown
166.0
1895
Male, age 76, right hemisphere
159.7
2664
Male, age 75, both hemispheres
156.2
Ventral tegmental area nTPM: 204.4
1915
Female, age 42, unknown
253.5
2410
Female, age 72, unknown
239.4
2021
Male, age 53, unknown
198.2
2218
Male, age 76, both hemispheres
192.9
1942
Male, age 51, unknown
182.2
2223
Female, age 72, unknown
160.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
218.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 218.8
Samples: 183
Max nTPM: 988.9
Min nTPM: 19.2
Std nTPM: 142.5
Median nTPM: 186.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
988.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
850.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
836.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
714.8
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
608.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
554.9
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
510.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
484.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
478.7
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
463.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
434.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
416.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
409.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
407.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
405.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
404.0
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
400.8
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
397.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
389.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
381.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
378.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
366.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
365.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
360.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
352.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
351.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
332.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
329.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
327.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
323.3
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
323.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
316.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
315.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
309.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
301.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
298.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
292.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
289.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
288.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
287.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
283.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
275.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
271.1
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
270.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
270.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
268.9
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
268.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
268.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
256.6
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
255.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
255.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
253.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
253.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
252.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
245.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
239.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
232.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
230.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
227.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
225.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
225.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
221.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
220.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
219.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
218.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
212.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
212.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
209.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
209.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
208.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
208.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
207.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
206.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
205.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
205.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
204.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
203.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
202.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
199.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
199.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
198.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
198.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
197.7
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
197.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
197.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
196.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
194.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
192.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
190.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
187.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
186.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
186.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
185.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
181.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
178.1
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
177.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
176.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
176.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
174.7
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
172.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
172.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
171.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
170.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
170.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
165.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
164.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
164.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
164.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
163.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
162.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
162.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
161.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
161.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
161.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
158.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
157.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
154.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
151.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
145.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
145.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
143.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
139.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
139.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
138.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
138.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
136.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
135.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
134.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
132.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
132.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
132.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
131.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
131.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
130.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
130.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
130.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
129.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
127.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
126.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
125.8
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
125.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
124.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
122.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
120.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
118.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
118.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
117.8
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
117.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
117.5
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
115.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
113.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
113.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
112.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
111.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
110.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
108.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
105.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
103.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
102.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
101.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
101.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
101.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
99.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
94.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
91.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
90.6
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
86.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
84.7
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
84.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
83.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
79.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
78.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
78.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
77.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
75.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
74.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
70.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
68.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
64.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
59.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
59.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
50.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
19.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
326.1
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 250.1
Samples: 1
Max nTPM: 250.1
Min nTPM: 250.1
Sample A
250.1
Midbrain nTPM: 307.8
Samples: 1
Max nTPM: 307.8
Min nTPM: 307.8
Sample A
307.8
Superior colliculi nTPM: 326.1
Samples: 1
Max nTPM: 326.1
Min nTPM: 326.1
Sample A
326.1
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
670.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 527.4
Samples: 3
Max nTPM: 608.9
Min nTPM: 409.1
Sample A
Female
564.2
Sample B
Female
409.1
Sample C
Male
608.9
Midbrain nTPM: 518.6
Samples: 3
Max nTPM: 689.9
Min nTPM: 389.0
Sample B
Female
689.9
Sample C
Male
476.8
Sample D
Male
389.0
Periaqueductal gray nTPM: 670.6
Samples: 3
Max nTPM: 764.9
Min nTPM: 538.6
Sample B
Female
708.2
Sample C
Male
764.9
Sample D
Male
538.6
Superior colliculi nTPM: 378.9
Samples: 4
Max nTPM: 456.9
Min nTPM: 214.1
Sample A
Female
456.9
Sample B
Female
214.1
Sample C
Male
413.0
Sample D
Male
431.4
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 101.1
Samples: 4
Max nTPM: 109.4
Min nTPM: 93.0
Sample A
109.4
Sample B
93.0
Sample C
97.5
Sample D
104.7
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
136.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 136.7
Samples: 4
Max nTPM: 146.3
Min nTPM: 127.4
Sample A
146.3
Sample A
136.8
Sample A
127.4
Sample A
136.4
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The Human Protein Atlas project is funded
