MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.6 nTPM
HPA Brain:97.1 nTPM
GTEx:49.6 nTPM
FANTOM5:242.7 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:21.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 97.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.6
2411 Female, age 72, unknown 101.4
1827 Male, age 72, unknown 100.1
1870 Female, age 42, unknown 97.2
2019 Male, age 18, unknown 89.8
1833 Male, age 53, unknown 86.0
1830 Male, age 51, unknown 85.1
2828 Female, age 72, unknown 81.2
2666 Male, age 74, left hemisphere 81.1
2219 Male, age 76, both hemispheres 79.5
2586 Male, age 75, left hemisphere 75.1
Dorsal raphe nucleus
nTPM: 89.7
2298 Female, age 72, unknown 100.6
2750 Male, age 76, both hemispheres 91.2
2016 Female, age 72, unknown 88.8
2047 Male, age 72, unknown 84.9
1828 Male, age 53, unknown 82.8
Inferior colliculus
nTPM: 92.1
2097 Female, age 72, unknown 105.4
1848 Female, age 42, unknown 91.1
1890 Male, age 53, unknown 86.6
2849 Male, age 72, unknown 85.2
Median raphe nucleus
nTPM: 92.8
2220 Male, age 76, midline 92.8
Periaquaductal grey, anterior
nTPM: 89.9
2502 Female, age 75, unknown 95.0
1947 Male, age 18, unknown 93.5
1795 Male, age 51, unknown 81.1
Periaquaductal grey, dorsal
nTPM: 88.9
1840 Male, age 53, unknown 98.2
2464 Female, age 72, unknown 86.6
2850 Male, age 76, both hemispheres 85.7
1831 Male, age 72, unknown 85.1
Periaquaductal grey, lateral
nTPM: 86.1
2053 Male, age 18, unknown 90.5
2272 Male, age 74, both hemispheres 88.7
2140 Male, age 76, both hemispheres 79.0
Pretectal area
nTPM: 95.1
1816 Male, age 51, unknown 105.4
1815 Male, age 53, unknown 101.1
1817 Female, age 42, unknown 100.8
1944 Female, age 72, unknown 99.8
2007 Male, age 72, unknown 98.8
2224 Female, age 72, unknown 96.2
2273 Male, age 74, both hemispheres 94.6
2667 Female, age 75, unknown 92.4
2825 Male, age 18, unknown 88.0
2407 Male, age 75, both hemispheres 85.9
2316 Male, age 76, right hemisphere 82.9
Red nucleus
nTPM: 88.5
1821 Female, age 72, unknown 109.0
2725 Female, age 75, unknown 94.6
1954 Female, age 42, unknown 92.5
1865 Male, age 51, unknown 92.2
2503 Female, age 72, unknown 91.9
1904 Male, age 53, unknown 89.6
2785 Male, age 18, unknown 87.2
2769 Male, age 72, unknown 83.3
2823 Male, age 76, right hemisphere 82.6
2227 Male, age 72, unknown 82.0
2584 Male, age 75, left hemisphere 79.5
2588 Male, age 74, left hemisphere 78.1
Substantia nigra
nTPM: 97.1
2241 Male, age 72, unknown 117.5
1916 Female, age 42, unknown 106.0
1941 Male, age 53, unknown 102.0
1889 Female, age 72, unknown 100.6
1851 Male, age 51, unknown 97.7
2409 Female, age 72, unknown 93.0
2590 Female, age 75, unknown 92.4
2665 Male, age 74, both hemispheres 88.3
2583 Male, age 75, right hemisphere 86.9
2699 Male, age 18, unknown 86.7
Superior colliculus
nTPM: 88.9
2261 Male, age 18, unknown 95.3
2587 Male, age 74, left hemisphere 94.8
1895 Male, age 76, right hemisphere 92.5
1913 Female, age 42, unknown 91.7
1796 Male, age 53, unknown 90.0
2087 Female, age 72, unknown 89.6
1839 Male, age 51, unknown 88.6
2668 Female, age 75, unknown 83.9
1995 Male, age 72, unknown 82.3
2664 Male, age 75, both hemispheres 80.3
Ventral tegmental area
nTPM: 91.8
2410 Female, age 72, unknown 97.5
1915 Female, age 42, unknown 96.3
2218 Male, age 76, both hemispheres 93.3
2223 Female, age 72, unknown 91.9
1942 Male, age 51, unknown 88.6
2021 Male, age 53, unknown 83.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.6
Samples: 183

Max nTPM: 77.3
Min nTPM: 36.3
Std nTPM: 7.8
Median nTPM: 47.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 77.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 71.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 70.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 69.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 67.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 67.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 65.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 65.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 64.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 63.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 63.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 242.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 242.7
FF:10158-103A5 76 years, female 242.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.4
Samples: 4

Max nTPM: 27.6
Min nTPM: 19.2
Sample A Female 27.6
Sample B Female 24.9
Sample C Male 26.0
Sample D Male 19.2
Midbrain
nTPM: 23.6
Samples: 4

Max nTPM: 25.6
Min nTPM: 21.3
Sample A Female 24.3
Sample B Female 25.6
Sample C Male 23.3
Sample D Male 21.3
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 24.5
Min nTPM: 20.8
Sample B Female 22.7
Sample C Male 24.5
Sample D Male 20.8
Superior colliculi
nTPM: 24.8
Samples: 4

Max nTPM: 25.9
Min nTPM: 23.0
Sample A Female 25.0
Sample B Female 25.9
Sample C Male 25.4
Sample D Male 23.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 22.1
Min nTPM: 21.0
Sample A Male 21.0
Sample B Male 22.1
Sample C Female 21.7
Sample D Female 21.2

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