A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
97.8
nTPM
Monaco:
261.0
nTPM
Schmiedel:
117.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.8
HPA sample
nTPM
Memory B-cell nTPM: 97.8
Samples: 6
Max nTPM: 112.1
Min nTPM: 73.4
P10809_1017
81.8
P10809_1025
112.1
P10809_1044
110.7
P10809_1063
108.4
P10809_1092
100.6
P10809_1105
73.4
Naive B-cell nTPM: 71.3
Samples: 6
Max nTPM: 136.7
Min nTPM: 43.5
P10809_1011
43.5
P10809_1029
72.5
P10809_1048
136.7
P10809_1067
73.4
P10809_1091
45.1
P10809_1104
56.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
261.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 191.4
Samples: 4
Max nTPM: 220.7
Min nTPM: 174.0
RHH5310_R3677
174.0
RHH5218_R3590
220.7
RHH5247_R3619
181.6
RHH5276_R3648
189.2
Naive B-cell nTPM: 169.7
Samples: 4
Max nTPM: 182.5
Min nTPM: 159.2
RHH5308_R3675
159.2
RHH5216_R3588
164.8
RHH5245_R3617
182.5
RHH5274_R3646
172.3
Non-switched memory B-cell nTPM: 245.1
Samples: 4
Max nTPM: 278.1
Min nTPM: 225.5
RHH5309_R3676
239.9
RHH5217_R3589
237.0
RHH5246_R3618
225.5
RHH5275_R3647
278.1
Plasmablast nTPM: 162.0
Samples: 4
Max nTPM: 186.0
Min nTPM: 130.4
RHH5312_R3679
172.9
RHH5220_R3592
158.8
RHH5249_R3621
130.4
RHH5278_R3650
186.0
Switched memory B-cell nTPM: 261.0
Samples: 4
Max nTPM: 299.5
Min nTPM: 212.2
RHH5311_R3678
212.2
RHH5219_R3591
259.2
RHH5248_R3620
272.9
RHH5277_R3649
299.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.6
Schmiedel sample id
TPM
Naive B-cell TPM: 117.6
Samples: 91
Max TPM: 160.4
Min TPM: 84.9
B_CELL_NAIVE_1
160.4
B_CELL_NAIVE_2
153.8
B_CELL_NAIVE_3
151.1
B_CELL_NAIVE_4
146.0
B_CELL_NAIVE_5
142.3
B_CELL_NAIVE_6
140.4
B_CELL_NAIVE_7
139.7
B_CELL_NAIVE_8
139.0
B_CELL_NAIVE_9
138.3
B_CELL_NAIVE_10
137.2
B_CELL_NAIVE_11
136.9
B_CELL_NAIVE_12
136.0
B_CELL_NAIVE_13
135.0
B_CELL_NAIVE_14
133.6
B_CELL_NAIVE_15
133.4
B_CELL_NAIVE_16
132.5
B_CELL_NAIVE_17
131.7
B_CELL_NAIVE_18
130.0
B_CELL_NAIVE_19
128.0
B_CELL_NAIVE_20
127.9
B_CELL_NAIVE_21
127.4
B_CELL_NAIVE_22
127.2
B_CELL_NAIVE_23
126.3
B_CELL_NAIVE_24
126.3
B_CELL_NAIVE_25
126.1
B_CELL_NAIVE_26
125.3
B_CELL_NAIVE_27
124.3
B_CELL_NAIVE_28
124.0
B_CELL_NAIVE_29
122.6
B_CELL_NAIVE_30
122.4
B_CELL_NAIVE_31
121.2
B_CELL_NAIVE_32
121.1
B_CELL_NAIVE_33
120.7
B_CELL_NAIVE_34
120.6
B_CELL_NAIVE_35
120.5
B_CELL_NAIVE_36
120.5
B_CELL_NAIVE_37
120.3
B_CELL_NAIVE_38
120.1
B_CELL_NAIVE_39
119.8
B_CELL_NAIVE_40
119.6
B_CELL_NAIVE_41
119.6
B_CELL_NAIVE_42
119.5
B_CELL_NAIVE_43
119.1
B_CELL_NAIVE_44
118.6
B_CELL_NAIVE_45
118.6
B_CELL_NAIVE_46
118.5
B_CELL_NAIVE_47
117.1
B_CELL_NAIVE_48
116.3
B_CELL_NAIVE_49
116.0
B_CELL_NAIVE_50
115.8
B_CELL_NAIVE_51
115.7
B_CELL_NAIVE_52
115.3
B_CELL_NAIVE_53
115.0
B_CELL_NAIVE_54
113.9
B_CELL_NAIVE_55
113.7
B_CELL_NAIVE_56
113.6
B_CELL_NAIVE_57
111.8
B_CELL_NAIVE_58
111.7
B_CELL_NAIVE_59
111.1
B_CELL_NAIVE_60
110.9
B_CELL_NAIVE_61
110.8
B_CELL_NAIVE_62
110.3
B_CELL_NAIVE_63
110.0
B_CELL_NAIVE_64
109.3
B_CELL_NAIVE_65
108.5
B_CELL_NAIVE_66
108.3
B_CELL_NAIVE_67
108.2
B_CELL_NAIVE_68
107.9
B_CELL_NAIVE_69
107.6
B_CELL_NAIVE_70
107.1
B_CELL_NAIVE_71
107.1
B_CELL_NAIVE_72
106.7
B_CELL_NAIVE_73
106.3
B_CELL_NAIVE_74
104.6
B_CELL_NAIVE_75
104.3
B_CELL_NAIVE_76
103.9
B_CELL_NAIVE_77
103.7
B_CELL_NAIVE_78
103.3
B_CELL_NAIVE_79
102.0
B_CELL_NAIVE_80
101.9
B_CELL_NAIVE_81
101.8
B_CELL_NAIVE_82
100.7
B_CELL_NAIVE_83
100.0
B_CELL_NAIVE_84
99.8
B_CELL_NAIVE_85
94.3
B_CELL_NAIVE_86
94.0
B_CELL_NAIVE_87
91.0
B_CELL_NAIVE_88
88.6
B_CELL_NAIVE_89
88.2
B_CELL_NAIVE_90
86.7
B_CELL_NAIVE_91
84.9
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