A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.6
nTPM
Monaco:
24.1
nTPM
Schmiedel:
17.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.6
HPA sample
nTPM
Classical monocyte nTPM: 3.7
Samples: 6
Max nTPM: 4.7
Min nTPM: 2.9
P10809_1003
2.9
P10809_1020
4.1
P10809_1039
3.7
P10809_1058
3.5
P10809_1080
4.7
P10809_1107
3.0
Intermediate monocyte nTPM: 3.3
Samples: 6
Max nTPM: 6.9
Min nTPM: 0.8
P10809_1004
2.8
P10809_1023
0.8
P10809_1042
2.7
P10809_1061
6.9
P10809_1081
4.4
P10809_1108
2.2
Non-classical monocyte nTPM: 2.3
Samples: 5
Max nTPM: 4.6
Min nTPM: 0.1
P10809_1005
2.2
P10809_1053
3.3
P10809_1072
0.1
P10809_1082
4.6
P10809_1109
1.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.1
Monaco sample
nTPM
Classical monocyte nTPM: 24.1
Samples: 4
Max nTPM: 27.8
Min nTPM: 21.8
RHH5313_R3680
23.4
RHH5221_R3593
27.8
RHH5250_R3622
23.3
RHH5279_R3651
21.8
Intermediate monocyte nTPM: 20.4
Samples: 4
Max nTPM: 24.0
Min nTPM: 17.8
RHH5314_R3681
17.8
RHH5222_R3594
24.0
RHH5251_R3623
18.4
RHH5280_R3652
21.4
Non-classical monocyte nTPM: 20.8
Samples: 4
Max nTPM: 25.2
Min nTPM: 13.6
RHH5315_R3682
21.1
RHH5223_R3595
23.3
RHH5252_R3624
13.6
RHH5281_R3653
25.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.0
Schmiedel sample id
TPM
Classical monocyte TPM: 14.4
Samples: 91
Max TPM: 19.6
Min TPM: 10.6
MONOCYTES_1
19.6
MONOCYTES_2
18.8
MONOCYTES_3
18.0
MONOCYTES_4
17.9
MONOCYTES_5
17.9
MONOCYTES_6
17.8
MONOCYTES_7
17.1
MONOCYTES_8
17.1
MONOCYTES_9
16.9
MONOCYTES_10
16.5
MONOCYTES_11
16.4
MONOCYTES_12
16.4
MONOCYTES_13
16.2
MONOCYTES_14
16.2
MONOCYTES_15
16.1
MONOCYTES_16
16.1
MONOCYTES_17
16.0
MONOCYTES_18
15.7
MONOCYTES_19
15.7
MONOCYTES_20
15.5
MONOCYTES_21
15.4
MONOCYTES_22
15.4
MONOCYTES_23
15.3
MONOCYTES_24
15.3
MONOCYTES_25
15.2
MONOCYTES_26
15.1
MONOCYTES_27
15.0
MONOCYTES_28
15.0
MONOCYTES_29
14.8
MONOCYTES_30
14.8
MONOCYTES_31
14.7
MONOCYTES_32
14.7
MONOCYTES_33
14.7
MONOCYTES_34
14.7
MONOCYTES_35
14.6
MONOCYTES_36
14.6
MONOCYTES_37
14.6
MONOCYTES_38
14.6
MONOCYTES_39
14.5
MONOCYTES_40
14.5
MONOCYTES_41
14.4
MONOCYTES_42
14.3
MONOCYTES_43
14.3
MONOCYTES_44
14.2
MONOCYTES_45
14.1
MONOCYTES_46
14.0
MONOCYTES_47
14.0
MONOCYTES_48
14.0
MONOCYTES_49
14.0
MONOCYTES_50
13.9
MONOCYTES_51
13.9
MONOCYTES_52
13.8
MONOCYTES_53
13.8
MONOCYTES_54
13.8
MONOCYTES_55
13.8
MONOCYTES_56
13.8
MONOCYTES_57
13.7
MONOCYTES_58
13.7
MONOCYTES_59
13.7
MONOCYTES_60
13.7
MONOCYTES_61
13.6
MONOCYTES_62
13.5
MONOCYTES_63
13.5
MONOCYTES_64
13.5
MONOCYTES_65
13.4
MONOCYTES_66
13.4
MONOCYTES_67
13.4
MONOCYTES_68
13.3
MONOCYTES_69
13.3
MONOCYTES_70
13.2
MONOCYTES_71
13.2
MONOCYTES_72
13.2
MONOCYTES_73
13.1
MONOCYTES_74
13.0
MONOCYTES_75
12.9
MONOCYTES_76
12.9
MONOCYTES_77
12.9
MONOCYTES_78
12.7
MONOCYTES_79
12.5
MONOCYTES_80
12.4
MONOCYTES_81
12.4
MONOCYTES_82
12.3
MONOCYTES_83
12.3
MONOCYTES_84
12.1
MONOCYTES_85
11.8
MONOCYTES_86
11.7
MONOCYTES_87
11.7
MONOCYTES_88
11.7
MONOCYTES_89
11.6
MONOCYTES_90
11.6
MONOCYTES_91
10.6
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Non-classical monocyte TPM: 17.0
Samples: 90
Max TPM: 35.1
Min TPM: 7.9
M2_1
35.1
M2_2
32.5
M2_3
29.5
M2_4
28.7
M2_5
26.4
M2_6
26.2
M2_7
25.8
M2_8
25.6
M2_9
25.5
M2_10
25.4
M2_11
25.4
M2_12
25.2
M2_13
25.1
M2_14
24.5
M2_15
24.4
M2_16
23.1
M2_17
23.0
M2_18
22.7
M2_19
22.5
M2_20
22.3
M2_21
22.2
M2_22
21.6
M2_23
21.3
M2_24
21.2
M2_25
21.0
M2_26
21.0
M2_27
20.5
M2_28
20.1
M2_29
19.9
M2_30
19.5
M2_31
19.3
M2_32
19.0
M2_33
18.8
M2_34
18.7
M2_35
18.7
M2_36
18.1
M2_37
18.1
M2_38
17.9
M2_39
17.7
M2_40
17.5
M2_41
17.2
M2_42
16.9
M2_43
16.8
M2_44
16.8
M2_45
16.6
M2_46
16.1
M2_47
16.0
M2_48
16.0
M2_49
15.8
M2_50
15.7
M2_51
15.5
M2_52
15.3
M2_53
14.8
M2_54
14.4
M2_55
14.3
M2_56
14.0
M2_57
13.5
M2_58
12.7
M2_59
12.4
M2_60
12.4
M2_61
12.0
M2_62
11.9
M2_63
11.8
M2_64
11.8
M2_65
11.8
M2_66
11.7
M2_67
11.6
M2_68
11.5
M2_69
11.1
M2_70
11.1
M2_71
11.0
M2_72
11.0
M2_73
10.9
M2_74
10.9
M2_75
10.9
M2_76
10.9
M2_77
10.9
M2_78
10.9
M2_79
10.7
M2_80
9.8
M2_81
9.7
M2_82
9.3
M2_83
9.3
M2_84
9.2
M2_85
9.2
M2_86
9.2
M2_87
9.2
M2_88
8.6
M2_89
8.5
M2_90
7.9
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