A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.7
nTPM
Monaco:
15.7
nTPM
Schmiedel:
32.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.7
HPA sample
nTPM
Classical monocyte nTPM: 0.5
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.1
P10809_1003
1.0
P10809_1020
0.4
P10809_1039
0.1
P10809_1058
0.3
P10809_1080
0.5
P10809_1107
0.8
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.1
P10809_1004
0.8
P10809_1023
1.7
P10809_1042
0.6
P10809_1061
0.7
P10809_1081
0.6
P10809_1108
0.1
Non-classical monocyte nTPM: 0.6
Samples: 5
Max nTPM: 1.1
Min nTPM: 0.0
P10809_1005
0.8
P10809_1053
0.2
P10809_1072
0.0
P10809_1082
1.0
P10809_1109
1.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
Monaco sample
nTPM
Classical monocyte nTPM: 6.8
Samples: 4
Max nTPM: 8.2
Min nTPM: 4.4
RHH5313_R3680
8.2
RHH5221_R3593
7.1
RHH5250_R3622
7.4
RHH5279_R3651
4.4
Intermediate monocyte nTPM: 15.8
Samples: 4
Max nTPM: 20.7
Min nTPM: 9.0
RHH5314_R3681
9.0
RHH5222_R3594
18.6
RHH5251_R3623
20.7
RHH5280_R3652
14.7
Non-classical monocyte nTPM: 15.7
Samples: 4
Max nTPM: 17.8
Min nTPM: 13.7
RHH5315_R3682
13.7
RHH5223_R3595
16.5
RHH5252_R3624
17.8
RHH5281_R3653
14.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.6
Schmiedel sample id
TPM
Classical monocyte TPM: 28.3
Samples: 91
Max TPM: 51.2
Min TPM: 10.5
MONOCYTES_1
51.2
MONOCYTES_2
49.4
MONOCYTES_3
47.2
MONOCYTES_4
45.8
MONOCYTES_5
45.4
MONOCYTES_6
45.1
MONOCYTES_7
44.6
MONOCYTES_8
43.7
MONOCYTES_9
42.7
MONOCYTES_10
42.0
MONOCYTES_11
41.6
MONOCYTES_12
41.5
MONOCYTES_13
41.3
MONOCYTES_14
41.2
MONOCYTES_15
41.0
MONOCYTES_16
40.8
MONOCYTES_17
39.9
MONOCYTES_18
39.6
MONOCYTES_19
39.2
MONOCYTES_20
38.5
MONOCYTES_21
38.4
MONOCYTES_22
38.0
MONOCYTES_23
38.0
MONOCYTES_24
37.2
MONOCYTES_25
36.6
MONOCYTES_26
36.5
MONOCYTES_27
36.4
MONOCYTES_28
36.0
MONOCYTES_29
35.3
MONOCYTES_30
34.5
MONOCYTES_31
34.5
MONOCYTES_32
33.2
MONOCYTES_33
32.6
MONOCYTES_34
31.2
MONOCYTES_35
31.1
MONOCYTES_36
30.4
MONOCYTES_37
30.3
MONOCYTES_38
30.2
MONOCYTES_39
29.3
MONOCYTES_40
29.2
MONOCYTES_41
29.2
MONOCYTES_42
28.9
MONOCYTES_43
28.7
MONOCYTES_44
27.9
MONOCYTES_45
27.7
MONOCYTES_46
27.2
MONOCYTES_47
26.3
MONOCYTES_48
26.2
MONOCYTES_49
26.2
MONOCYTES_50
26.2
MONOCYTES_51
25.4
MONOCYTES_52
24.8
MONOCYTES_53
24.6
MONOCYTES_54
24.6
MONOCYTES_55
24.5
MONOCYTES_56
23.6
MONOCYTES_57
22.7
MONOCYTES_58
22.5
MONOCYTES_59
22.2
MONOCYTES_60
21.5
MONOCYTES_61
21.5
MONOCYTES_62
21.5
MONOCYTES_63
21.4
MONOCYTES_64
21.3
MONOCYTES_65
21.1
MONOCYTES_66
20.7
MONOCYTES_67
20.6
MONOCYTES_68
20.4
MONOCYTES_69
20.1
MONOCYTES_70
19.0
MONOCYTES_71
18.7
MONOCYTES_72
18.3
MONOCYTES_73
18.2
MONOCYTES_74
18.2
MONOCYTES_75
18.0
MONOCYTES_76
17.5
MONOCYTES_77
16.6
MONOCYTES_78
16.5
MONOCYTES_79
16.1
MONOCYTES_80
15.9
MONOCYTES_81
14.9
MONOCYTES_82
14.3
MONOCYTES_83
14.3
MONOCYTES_84
13.5
MONOCYTES_85
13.4
MONOCYTES_86
13.2
MONOCYTES_87
12.5
MONOCYTES_88
12.1
MONOCYTES_89
11.4
MONOCYTES_90
11.3
MONOCYTES_91
10.5
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Non-classical monocyte TPM: 32.6
Samples: 90
Max TPM: 69.5
Min TPM: 6.4
M2_1
69.5
M2_2
69.3
M2_3
67.5
M2_4
62.2
M2_5
58.2
M2_6
57.2
M2_7
54.2
M2_8
53.9
M2_9
52.9
M2_10
52.7
M2_11
52.4
M2_12
52.0
M2_13
51.1
M2_14
48.9
M2_15
48.4
M2_16
48.1
M2_17
47.0
M2_18
46.2
M2_19
45.9
M2_20
45.0
M2_21
44.6
M2_22
44.5
M2_23
42.4
M2_24
42.1
M2_25
41.8
M2_26
41.4
M2_27
41.2
M2_28
40.7
M2_29
39.3
M2_30
39.2
M2_31
38.8
M2_32
38.0
M2_33
37.7
M2_34
37.5
M2_35
37.4
M2_36
37.0
M2_37
36.9
M2_38
36.1
M2_39
35.7
M2_40
35.5
M2_41
35.4
M2_42
35.0
M2_43
33.9
M2_44
33.2
M2_45
31.6
M2_46
31.1
M2_47
30.8
M2_48
30.6
M2_49
30.1
M2_50
30.0
M2_51
30.0
M2_52
29.7
M2_53
28.7
M2_54
28.6
M2_55
28.5
M2_56
28.3
M2_57
28.2
M2_58
27.9
M2_59
26.9
M2_60
25.5
M2_61
24.8
M2_62
22.3
M2_63
21.4
M2_64
21.3
M2_65
21.0
M2_66
20.8
M2_67
19.7
M2_68
19.2
M2_69
19.0
M2_70
17.5
M2_71
17.1
M2_72
16.9
M2_73
16.4
M2_74
16.0
M2_75
15.9
M2_76
14.6
M2_77
14.1
M2_78
13.5
M2_79
13.0
M2_80
12.6
M2_81
12.3
M2_82
11.9
M2_83
11.7
M2_84
11.3
M2_85
10.4
M2_86
10.3
M2_87
10.3
M2_88
7.9
M2_89
7.6
M2_90
6.4
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