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FDFT1
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  • FDFT1
TISSUE PRIMARY DATA URINARY BLADDER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Urinary bladder
Tissue proteome
Tissue methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:70.0 nTPM
HPA:3.0 nTPM
GTEx:70.0 nTPM
FANTOM5:179.6 Scaled Tags Per Million
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA008874
Urothelial cells Medium


URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.0
overview
Male, age 74
Urinary bladder sample 264
nTPM: 3.4
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 2.9
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 0.1
Urinary bladder sample 1597
nTPM: 2.5
N/A
Female, age 0.1
Urinary bladder sample 1598
nTPM: 3.3

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.0
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 70.0
Samples: 77

Max nTPM: 173.8
Min nTPM: 27.4
Std nTPM: 22.4
Median nTPM: 68.0
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 173.8
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 123.3
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 118.7
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 107.7
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 104.3
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 102.7
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 102.5
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 98.9
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 96.4
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 93.0
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 92.9
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 90.1
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 85.2
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 84.7
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 83.1
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 81.8
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 81.5
GTEX-Q734-1226-SM-GRR21 40-49 years, female 78.1
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 77.3
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 76.8
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 76.6
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 76.4
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 76.3
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 75.9
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 75.8
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 75.7
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 74.9
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 74.4
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 73.6
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 72.9
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 72.4
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 71.6
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 71.5
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 70.5
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 70.3
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 70.2
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 69.5
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 69.0
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 68.0
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 67.8
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 67.5
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 67.0
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 65.0
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 64.9
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 64.6
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 64.3
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 64.2
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 64.0
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 63.8
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 63.0
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 62.5
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 61.3
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 59.6
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 57.9
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 57.9
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 57.7
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 56.8
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 56.4
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 54.7
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 54.4
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 54.0
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 53.9
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 52.5
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 49.8
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 49.0
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 47.6
GTEX-R45C-2426-SM-HL11G 60-69 years, female 47.6
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 45.8
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 45.8
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 45.7
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 45.6
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 45.4
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 42.4
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 39.8
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 36.3
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 30.1
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 27.4
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

179.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 179.6
FF:10011-101C2 55,58,79 years, mixed 179.6

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