A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
107.2
nTPM
Monaco:
331.5
nTPM
Schmiedel:
136.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.2
HPA sample
nTPM
Memory B-cell nTPM: 86.2
Samples: 6
Max nTPM: 126.8
Min nTPM: 59.7
P10809_1017
59.7
P10809_1025
94.5
P10809_1044
126.8
P10809_1063
92.4
P10809_1092
82.0
P10809_1105
61.7
Naive B-cell nTPM: 107.2
Samples: 6
Max nTPM: 123.8
Min nTPM: 71.5
P10809_1011
71.5
P10809_1029
110.3
P10809_1048
115.2
P10809_1067
123.8
P10809_1091
115.5
P10809_1104
106.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
331.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 212.3
Samples: 4
Max nTPM: 238.3
Min nTPM: 173.8
RHH5310_R3677
173.8
RHH5218_R3590
238.3
RHH5247_R3619
218.3
RHH5276_R3648
218.9
Naive B-cell nTPM: 331.5
Samples: 4
Max nTPM: 365.5
Min nTPM: 284.5
RHH5308_R3675
284.5
RHH5216_R3588
356.0
RHH5245_R3617
320.1
RHH5274_R3646
365.5
Non-switched memory B-cell nTPM: 236.6
Samples: 4
Max nTPM: 253.5
Min nTPM: 209.6
RHH5309_R3676
209.6
RHH5217_R3589
240.1
RHH5246_R3618
243.0
RHH5275_R3647
253.5
Plasmablast nTPM: 92.6
Samples: 4
Max nTPM: 99.5
Min nTPM: 75.1
RHH5312_R3679
99.5
RHH5220_R3592
75.1
RHH5249_R3621
98.9
RHH5278_R3650
96.8
Switched memory B-cell nTPM: 183.9
Samples: 4
Max nTPM: 193.0
Min nTPM: 163.5
RHH5311_R3678
163.5
RHH5219_R3591
193.0
RHH5248_R3620
191.0
RHH5277_R3649
187.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
136.3
Schmiedel sample id
TPM
Naive B-cell TPM: 136.3
Samples: 91
Max TPM: 232.4
Min TPM: 56.1
B_CELL_NAIVE_1
232.4
B_CELL_NAIVE_2
222.3
B_CELL_NAIVE_3
214.1
B_CELL_NAIVE_4
202.4
B_CELL_NAIVE_5
199.3
B_CELL_NAIVE_6
190.6
B_CELL_NAIVE_7
186.5
B_CELL_NAIVE_8
183.2
B_CELL_NAIVE_9
181.6
B_CELL_NAIVE_10
180.8
B_CELL_NAIVE_11
177.8
B_CELL_NAIVE_12
176.0
B_CELL_NAIVE_13
173.6
B_CELL_NAIVE_14
170.4
B_CELL_NAIVE_15
169.5
B_CELL_NAIVE_16
168.5
B_CELL_NAIVE_17
167.9
B_CELL_NAIVE_18
165.4
B_CELL_NAIVE_19
163.9
B_CELL_NAIVE_20
163.6
B_CELL_NAIVE_21
159.6
B_CELL_NAIVE_22
158.3
B_CELL_NAIVE_23
158.2
B_CELL_NAIVE_24
157.6
B_CELL_NAIVE_25
155.1
B_CELL_NAIVE_26
154.2
B_CELL_NAIVE_27
152.9
B_CELL_NAIVE_28
149.8
B_CELL_NAIVE_29
149.6
B_CELL_NAIVE_30
149.3
B_CELL_NAIVE_31
147.4
B_CELL_NAIVE_32
147.2
B_CELL_NAIVE_33
147.0
B_CELL_NAIVE_34
146.6
B_CELL_NAIVE_35
145.9
B_CELL_NAIVE_36
144.9
B_CELL_NAIVE_37
144.6
B_CELL_NAIVE_38
144.0
B_CELL_NAIVE_39
142.0
B_CELL_NAIVE_40
141.2
B_CELL_NAIVE_41
138.5
B_CELL_NAIVE_42
138.1
B_CELL_NAIVE_43
137.5
B_CELL_NAIVE_44
137.4
B_CELL_NAIVE_45
136.5
B_CELL_NAIVE_46
136.4
B_CELL_NAIVE_47
136.3
B_CELL_NAIVE_48
135.0
B_CELL_NAIVE_49
133.0
B_CELL_NAIVE_50
132.3
B_CELL_NAIVE_51
132.2
B_CELL_NAIVE_52
131.8
B_CELL_NAIVE_53
131.3
B_CELL_NAIVE_54
130.1
B_CELL_NAIVE_55
129.2
B_CELL_NAIVE_56
128.9
B_CELL_NAIVE_57
127.0
B_CELL_NAIVE_58
124.4
B_CELL_NAIVE_59
123.8
B_CELL_NAIVE_60
121.5
B_CELL_NAIVE_61
119.4
B_CELL_NAIVE_62
118.2
B_CELL_NAIVE_63
117.2
B_CELL_NAIVE_64
116.4
B_CELL_NAIVE_65
114.5
B_CELL_NAIVE_66
114.0
B_CELL_NAIVE_67
112.6
B_CELL_NAIVE_68
110.7
B_CELL_NAIVE_69
110.7
B_CELL_NAIVE_70
110.3
B_CELL_NAIVE_71
110.0
B_CELL_NAIVE_72
109.2
B_CELL_NAIVE_73
108.9
B_CELL_NAIVE_74
107.2
B_CELL_NAIVE_75
107.0
B_CELL_NAIVE_76
106.7
B_CELL_NAIVE_77
103.0
B_CELL_NAIVE_78
102.1
B_CELL_NAIVE_79
99.6
B_CELL_NAIVE_80
98.1
B_CELL_NAIVE_81
97.5
B_CELL_NAIVE_82
94.1
B_CELL_NAIVE_83
86.1
B_CELL_NAIVE_84
85.8
B_CELL_NAIVE_85
84.0
B_CELL_NAIVE_86
82.8
B_CELL_NAIVE_87
80.4
B_CELL_NAIVE_88
79.4
B_CELL_NAIVE_89
79.1
B_CELL_NAIVE_90
57.2
B_CELL_NAIVE_91
56.1
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