MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA Brain:90.7 nTPM
GTEx:9.7 nTPM
FANTOM5:12.7 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 90.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.8
2019 Male, age 18, unknown 52.0
1827 Male, age 72, unknown 49.2
1833 Male, age 53, unknown 46.9
2411 Female, age 72, unknown 42.5
1830 Male, age 51, unknown 42.4
1870 Female, age 42, unknown 42.1
2586 Male, age 75, left hemisphere 39.4
2666 Male, age 74, left hemisphere 39.1
2219 Male, age 76, both hemispheres 37.6
2828 Female, age 72, unknown 36.9
Dorsal raphe nucleus
nTPM: 57.3
2298 Female, age 72, unknown 81.0
2016 Female, age 72, unknown 71.4
1828 Male, age 53, unknown 51.8
2047 Male, age 72, unknown 46.8
2750 Male, age 76, both hemispheres 35.4
Inferior colliculus
nTPM: 47.7
2849 Male, age 72, unknown 53.7
2097 Female, age 72, unknown 46.2
1848 Female, age 42, unknown 45.8
1890 Male, age 53, unknown 44.9
Median raphe nucleus
nTPM: 38.5
2220 Male, age 76, midline 38.5
Periaquaductal grey, anterior
nTPM: 53.1
1795 Male, age 51, unknown 57.9
1947 Male, age 18, unknown 51.5
2502 Female, age 75, unknown 49.9
Periaquaductal grey, dorsal
nTPM: 74.5
2850 Male, age 76, both hemispheres 125.4
1840 Male, age 53, unknown 66.1
2464 Female, age 72, unknown 55.5
1831 Male, age 72, unknown 51.3
Periaquaductal grey, lateral
nTPM: 90.7
2272 Male, age 74, both hemispheres 116.3
2140 Male, age 76, both hemispheres 104.4
2053 Male, age 18, unknown 51.4
Pretectal area
nTPM: 50.4
2273 Male, age 74, both hemispheres 98.4
2224 Female, age 72, unknown 60.3
2825 Male, age 18, unknown 54.6
2407 Male, age 75, both hemispheres 50.3
2667 Female, age 75, unknown 47.7
2316 Male, age 76, right hemisphere 47.1
2007 Male, age 72, unknown 42.5
1816 Male, age 51, unknown 40.0
1817 Female, age 42, unknown 38.7
1815 Male, age 53, unknown 37.8
1944 Female, age 72, unknown 37.0
Red nucleus
nTPM: 40.1
2785 Male, age 18, unknown 45.2
2725 Female, age 75, unknown 44.3
2227 Male, age 72, unknown 43.0
2769 Male, age 72, unknown 42.9
1865 Male, age 51, unknown 40.5
2584 Male, age 75, left hemisphere 40.2
2588 Male, age 74, left hemisphere 39.5
1904 Male, age 53, unknown 39.3
1821 Female, age 72, unknown 38.8
2823 Male, age 76, right hemisphere 36.9
1954 Female, age 42, unknown 36.0
2503 Female, age 72, unknown 34.1
Substantia nigra
nTPM: 40.6
1941 Male, age 53, unknown 49.9
2409 Female, age 72, unknown 46.4
2699 Male, age 18, unknown 44.6
2241 Male, age 72, unknown 43.0
2590 Female, age 75, unknown 40.7
2583 Male, age 75, right hemisphere 40.3
1851 Male, age 51, unknown 36.8
1889 Female, age 72, unknown 36.6
1916 Female, age 42, unknown 35.3
2665 Male, age 74, both hemispheres 32.0
Superior colliculus
nTPM: 45.9
1995 Male, age 72, unknown 51.5
2587 Male, age 74, left hemisphere 50.6
2664 Male, age 75, both hemispheres 50.4
1839 Male, age 51, unknown 49.1
1895 Male, age 76, right hemisphere 47.1
2261 Male, age 18, unknown 45.4
2668 Female, age 75, unknown 43.9
1796 Male, age 53, unknown 43.3
1913 Female, age 42, unknown 41.8
2087 Female, age 72, unknown 36.4
Ventral tegmental area
nTPM: 40.6
2021 Male, age 53, unknown 48.1
1942 Male, age 51, unknown 45.0
2223 Female, age 72, unknown 39.3
1915 Female, age 42, unknown 38.1
2410 Female, age 72, unknown 37.1
2218 Male, age 76, both hemispheres 36.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 183

Max nTPM: 32.2
Min nTPM: 1.7
Std nTPM: 3.8
Median nTPM: 9.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 32.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 26.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.6
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 20.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 19.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 18.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 17.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 17.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 14.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.7
FF:10158-103A5 76 years, female 12.7

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