A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.9
nTPM
Monaco:
72.7
nTPM
Schmiedel:
14.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.9
HPA sample
nTPM
Classical monocyte nTPM: 37.9
Samples: 6
Max nTPM: 44.3
Min nTPM: 27.5
P10809_1003
39.8
P10809_1020
44.3
P10809_1039
35.0
P10809_1058
27.5
P10809_1080
41.7
P10809_1107
39.3
Intermediate monocyte nTPM: 33.9
Samples: 6
Max nTPM: 43.4
Min nTPM: 27.9
P10809_1004
29.1
P10809_1023
34.6
P10809_1042
39.9
P10809_1061
43.4
P10809_1081
28.2
P10809_1108
27.9
Non-classical monocyte nTPM: 34.8
Samples: 5
Max nTPM: 42.3
Min nTPM: 25.3
P10809_1005
38.7
P10809_1053
30.8
P10809_1072
42.3
P10809_1082
25.3
P10809_1109
36.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.7
Monaco sample
nTPM
Classical monocyte nTPM: 72.7
Samples: 4
Max nTPM: 83.1
Min nTPM: 63.5
RHH5313_R3680
83.1
RHH5221_R3593
73.4
RHH5250_R3622
70.7
RHH5279_R3651
63.5
Intermediate monocyte nTPM: 55.1
Samples: 4
Max nTPM: 70.9
Min nTPM: 36.5
RHH5314_R3681
59.8
RHH5222_R3594
70.9
RHH5251_R3623
36.5
RHH5280_R3652
53.3
Non-classical monocyte nTPM: 56.4
Samples: 4
Max nTPM: 72.7
Min nTPM: 42.5
RHH5315_R3682
72.7
RHH5223_R3595
59.0
RHH5252_R3624
51.6
RHH5281_R3653
42.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.7
Schmiedel sample id
TPM
Classical monocyte TPM: 14.7
Samples: 91
Max TPM: 22.7
Min TPM: 7.8
MONOCYTES_1
22.7
MONOCYTES_2
21.8
MONOCYTES_3
20.7
MONOCYTES_4
20.6
MONOCYTES_5
20.3
MONOCYTES_6
19.8
MONOCYTES_7
19.4
MONOCYTES_8
19.2
MONOCYTES_9
19.2
MONOCYTES_10
18.8
MONOCYTES_11
18.7
MONOCYTES_12
18.6
MONOCYTES_13
18.0
MONOCYTES_14
18.0
MONOCYTES_15
17.9
MONOCYTES_16
17.9
MONOCYTES_17
17.8
MONOCYTES_18
17.7
MONOCYTES_19
17.6
MONOCYTES_20
17.6
MONOCYTES_21
17.6
MONOCYTES_22
17.5
MONOCYTES_23
17.4
MONOCYTES_24
17.0
MONOCYTES_25
16.8
MONOCYTES_26
16.8
MONOCYTES_27
16.7
MONOCYTES_28
16.6
MONOCYTES_29
16.6
MONOCYTES_30
16.6
MONOCYTES_31
16.5
MONOCYTES_32
16.4
MONOCYTES_33
16.3
MONOCYTES_34
16.1
MONOCYTES_35
16.0
MONOCYTES_36
15.9
MONOCYTES_37
15.7
MONOCYTES_38
15.5
MONOCYTES_39
15.5
MONOCYTES_40
15.4
MONOCYTES_41
15.3
MONOCYTES_42
15.3
MONOCYTES_43
14.9
MONOCYTES_44
14.9
MONOCYTES_45
14.6
MONOCYTES_46
14.5
MONOCYTES_47
14.5
MONOCYTES_48
14.5
MONOCYTES_49
14.4
MONOCYTES_50
14.3
MONOCYTES_51
14.2
MONOCYTES_52
14.1
MONOCYTES_53
14.1
MONOCYTES_54
14.0
MONOCYTES_55
13.8
MONOCYTES_56
13.8
MONOCYTES_57
13.7
MONOCYTES_58
13.7
MONOCYTES_59
13.5
MONOCYTES_60
13.5
MONOCYTES_61
13.2
MONOCYTES_62
13.1
MONOCYTES_63
12.9
MONOCYTES_64
12.7
MONOCYTES_65
12.5
MONOCYTES_66
12.3
MONOCYTES_67
12.3
MONOCYTES_68
12.2
MONOCYTES_69
12.0
MONOCYTES_70
11.9
MONOCYTES_71
11.8
MONOCYTES_72
11.7
MONOCYTES_73
11.5
MONOCYTES_74
11.5
MONOCYTES_75
11.3
MONOCYTES_76
11.3
MONOCYTES_77
11.2
MONOCYTES_78
11.1
MONOCYTES_79
10.6
MONOCYTES_80
10.6
MONOCYTES_81
10.3
MONOCYTES_82
10.0
MONOCYTES_83
10.0
MONOCYTES_84
9.9
MONOCYTES_85
9.9
MONOCYTES_86
9.3
MONOCYTES_87
9.0
MONOCYTES_88
8.9
MONOCYTES_89
8.1
MONOCYTES_90
8.0
MONOCYTES_91
7.8
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Non-classical monocyte TPM: 10.6
Samples: 90
Max TPM: 17.8
Min TPM: 3.7
M2_1
17.8
M2_2
17.2
M2_3
16.9
M2_4
16.6
M2_5
16.1
M2_6
16.0
M2_7
15.7
M2_8
15.6
M2_9
15.6
M2_10
15.6
M2_11
14.7
M2_12
14.6
M2_13
14.4
M2_14
14.3
M2_15
14.3
M2_16
14.2
M2_17
14.1
M2_18
14.0
M2_19
13.8
M2_20
13.6
M2_21
13.3
M2_22
13.2
M2_23
13.2
M2_24
13.2
M2_25
12.9
M2_26
12.5
M2_27
12.5
M2_28
12.4
M2_29
12.2
M2_30
12.1
M2_31
12.0
M2_32
12.0
M2_33
11.9
M2_34
11.8
M2_35
11.7
M2_36
11.4
M2_37
11.3
M2_38
11.2
M2_39
11.0
M2_40
11.0
M2_41
10.9
M2_42
10.7
M2_43
10.6
M2_44
10.6
M2_45
10.5
M2_46
10.3
M2_47
10.3
M2_48
10.3
M2_49
10.2
M2_50
10.1
M2_51
10.0
M2_52
9.9
M2_53
9.7
M2_54
9.7
M2_55
9.1
M2_56
9.1
M2_57
9.0
M2_58
9.0
M2_59
9.0
M2_60
8.9
M2_61
8.9
M2_62
8.7
M2_63
8.6
M2_64
8.4
M2_65
8.3
M2_66
8.3
M2_67
8.3
M2_68
8.2
M2_69
8.1
M2_70
8.0
M2_71
7.9
M2_72
7.4
M2_73
7.4
M2_74
7.4
M2_75
7.4
M2_76
7.4
M2_77
7.1
M2_78
7.0
M2_79
7.0
M2_80
6.8
M2_81
5.9
M2_82
5.8
M2_83
5.7
M2_84
5.1
M2_85
5.1
M2_86
4.9
M2_87
4.8
M2_88
4.7
M2_89
4.2
M2_90
3.7
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